| Family |
Family Information |
Matrix Name |
Matrix Information |
| V$AHRR |
AHR-arnt heterodimers and AHR-related factors |
V$NXF_ARNT.01 |
bHLH-PAS type transcription factors NXF/ARNT heterodimer |
| V$AP2F |
Activator protein 2 |
V$AP2.02 |
Activator protein 2 alpha |
| V$AP4R |
AP4 and related proteins |
V$LYL1_E12.01 |
LYL1-E12 heterodimeric complex |
| V$TAL1BETAHEB.01 |
Tal-1beta/HEB heterodimer |
| V$BTBF |
BTB/POZ (broad complex, Trantrach, Bric à brac/pox viruses and zinc fingers)
transcription factor |
V$KAISO.01 |
Transcription factor Kaiso, ZBTB33 |
| V$CLOX |
CLOX and CLOX homology (CDP) factors |
V$CUT2.01 |
Cut repeat II |
| V$CREB |
Camp-responsive element binding proteins |
V$ATF2.01 |
Activating transcription factor 2 |
| V$CJUN_ATF2.01 |
c-Jun/ATF2 heterodimers |
| V$CSEN |
Calsenilin, presenilin binding protein, EF hand transcription factor |
V$DREAM.01 |
Downstream regulatory element-antagonist modulator, Ca2+-binding protein
of the neuronal calcium sensors family that binds DRE (downstream regulatory
element) sites as a tetramer |
| V$EKLF |
Basic and erythroid krueppel like factors |
V$KKLF.01 |
Kidney-enriched kruppel-like factor, KLF15 |
| V$EVI1 |
EVI1-myleoid transforming protein |
V$EVI1.07 |
Evi-1 zinc finger protein, carboxy-terminal zinc finger domain |
| V$GZF1 |
GDNF-inducible zinc finger gene 1 |
V$GZF1.01 |
GDNF-inducible zinc finger protein 1 (ZNF336) |
| V$HEAT |
Heat shock factors |
V$HSF1.02 |
Heat shock factor 1 |
| V$HSF1.03 |
Heat shock factor 1 |
| V$HSF2.01 |
Heat shock factor 2 |
| V$HSF2.02 |
Heat shock factor 2 |
| V$HIFF |
Hypoxia inducible factor, bHLH / PAS protein family |
V$DEC2.01 |
Basic helix-loop-helix protein known as Dec2 or Sharp2 |
| V$MEF2 |
MEF2, myocyte-specific enhancer binding factor |
V$MEF2.06 |
Myocyte-specific enhancer factor 2 |
| V$MEF2.07 |
Myocyte-specific enhancer factor 2 |
| V$SL1.01 |
Member of the RSRF (related to serum response factor) protein family
from Xenopus laevis |
| V$MYOD |
Myoblast determining factors |
V$MYOGENIN.01 |
Myogenic bHLH protein myogenin (myf4) |
| V$MZF1 |
Myeloid zinc finger 1 factors |
V$MZF1.02 |
Myeloid zinc finger protein MZF1 |
| V$NKXH |
NKX homeodomain factors |
V$HMX2.01 |
Hmx2/Nkx5-2 homeodomain transcription factor |
| V$HMX2.02 |
Hmx2/Nkx5-2 homeodomain transcription factor |
| V$HMX3.02 |
Hmx3/Nkx5-1 homeodomain transcription factor |
| V$NR2F |
Nuclear receptor subfamily 2 factors |
V$PNR.01 |
Photoreceptor-specific nuclear receptor subfamily 2, group E, member
3 (Nr2e3) |
| V$PAX3 |
PAX-3 binding sites |
V$PAX3.02 |
Pax-3 paired domain protein |
| V$RARF |
Nuclear receptor for retinoic acid |
V$RAR.02 |
Retinoic acid receptor, member of nuclear receptors, DR5 site |
| V$RXRF |
RXR heterodimer binding sites |
V$VDR_RXR.03 |
Bipartite binding site of VDR/RXR heterodimers without a spacer between
directly repeated motifs |
| V$VDR_RXR.04 |
Bipartite binding site of VDR/RXR heterodimers: 2 spacer nucleotides
between the two directly repeated motifs |
| V$VDR_RXR.05 |
Bipartite binding site of VDR/RXR heterodimers: 3 spacer nucleotides
between the two directly repeated motifs |
| V$VDR_RXR.06 |
Bipartite binding site of VDR/RXR heterodimers: 4 spacer nucleotides
between the two directly repeated motifs |
| V$SP1F |
GC-Box factors SP1/GC |
V$SP1.02 |
Stimulating protein 1, ubiquitous zinc finger transcription factor |
| V$YY1F |
Activator/repressor binding to transcription initiation site |
V$YY1.02 |
Yin and Yang 1 repressor sites |
| V$ZBPF |
Zinc binding protein factors |
V$ZNF219.01 |
Kruppel-like zinc finger protein 219 |
| Family |
Family Information |
Matrix Name |
Matrix Information |
| P$AGP1 |
Plant GATA-type zinc finger protein |
P$AGP1.01 |
AG-motif binding protein 1 |
| P$AHBP |
Arabidopsis homeobox protein |
P$HAHB4.01 |
Sunflower homeodomain leucine-zipper protein Hahb-4 |
| P$DREB |
Dehydration responsive element binding factors |
P$HVDRF1.01 |
H. vulgare dehydration-response factor 1 |
| P$GBOX |
Plant G-box/C-box bZIP proteins |
P$ABZ1.01 |
Anaerobic basic leucine zipper |
| P$GBF1.01 |
bZIP protein G-Box binding factor 1 |
| P$OSBHLH66.01 |
Rice bHLH protein |
| P$TGA1.01 |
Arabidopsis leucine zipper protein TGA1 |
| P$IDDF |
ID domain factors, the ID domain includes a cluster of three different
types of zinc fingers seperated from a fourth C2H2 finger by a long spacer |
P$ID1.01 |
Maize INDETERMINATE1 zinc finger protein |
| P$MADS |
MADS box proteins |
P$SQUA.01 |
MADS-box protein SQUAMOSA |
| P$MYBS |
MYB proteins with single DNA binding domains |
P$TAMYB80.01 |
MYB protein from wheat |
| P$NACF |
Nascent polypeptide-associated complex (NAC) domain-containing factor |
P$TANAC69.01 |
Wheat NACdomain DNA binding factor |
| P$URNA |
Upstream sequence element of U-snRNA genes |
P$USE.01 |
Upstream sequence elements in the promoters of U-snRNA genes of higher
plants |
| Family |
Family Information |
Matrix Name |
Matrix Information |
| F$ARPU |
Regulator of pyrimidine and purine utilization pathway |
F$PPR1.01 |
Pyrimidine pathway regulator 1 |
| F$GATA |
Fungal GATA binding factors |
F$GATA.01 |
GATA binding factor (yeast) |
| F$HPHO |
Homeodomain protein Pho2 |
F$PHO2.01 |
Homeodomain protein Pho2 |
| F$PDRE |
Pleiotropic drug resistance responsive elements |
F$PDRE.01 |
Pleiotropic drug resistance responsive element (yeast) |
| F$YGCR |
Yeast activator of glycolytic genes |
F$CSRE.01 |
Carbon source-responsive element (yeast) |
| F$YMAT |
Yeast mating factors |
F$MATALPHA2.01 |
Homeodomain protein mating factor alpha2 |
| F$YMCB |
Yeast Mlu I cell cycle box |
F$MCB.01 |
Mlu I cell cycle box, activates G1/S-specific transcription (yeast) |
