| Family |
Family Information |
Matrix Name |
Matrix Information |
| V$AARF |
AARE binding factors |
V$AARE.01 |
Amino acid response element, ATF4 binding site |
| V$AP1R |
MAF and AP1 related factors |
V$BACH2.01 |
Bach2 bound TRE |
| V$NFE2L2.01 |
Nuclear factor (erythroid-derived 2)-like 2, NRF2 |
| V$CDXF |
Vertebrate caudal related homeodomain protein |
V$CDX1.01 |
Intestine specific homeodomain factor CDX-1 |
| V$DEAF |
Homolog to deformed epidermal autoregulatory factor-1 from D. melanogaster |
V$NUDR.01 |
NUDR (nuclear DEAF-1 related transcriptional regulator protein |
| V$ETSF |
Human and murine ETS1 factors |
V$ELF2.01 |
Ets - family member ELF-2 (NERF1a) |
| V$GABF |
GA-boxes |
V$GAGA.01 |
GAGA-Box |
| V$HNF1 |
Hepatic Nuclear Factor 1 |
V$HNF1.03 |
Hepatic nuclear factor 1 |
| V$HOXF |
Factors with moderate activity to homeo domain consensus sequence |
V$GSC.01 |
Vertebrate bicoid-type homeodomain protein Goosecoid |
| V$LHXF |
Lim homeodomain factors |
V$LHX3.01 |
Homeodomain binding site in LIM/Homeodomain factor LHX3 |
| V$NKXH |
NKX/DLX - homeodomain sites |
V$NKX32.01 |
Homeodomain protein NKX3.2 (BAPX1, NKX3B, Bagpipe homolog) |
| V$RBPF |
RBPJ - kappa |
V$RBPJK.02 |
Mammalian transcriptional repressor RBP-Jkappa/CBF1 |
| V$RP58 |
RP58 (ZFP238) zinc finger protein |
V$RP58.01 |
Zinc finger protein RP58 (ZNF238), associated preferentially with heterochromatin |
| Family |
Family Information |
Matrix Name |
Matrix Information |
| P$ABRE |
ABA response elements |
P$ABRE.01 |
ABA response elements |
| P$AGLF |
Agamous like factors |
P$AGL1.01 |
AGL1, Arabidopsis MADS-domain protein AGAMOUS-like 1 |
| P$AGL2.01 |
AGL2, Arabidopsis MADS-domain protein AGAMOUS-like 2 |
| P$AGL15.01 |
AGL15, Arabidopsis MADS-domain protein AGAMOUS-like 15 |
| P$AHBP |
Arabidopsis homeobox protein |
P$ATHB9.01 |
HD-ZIP class III protein ATHB9 |
| P$AREF |
Auxin response element |
P$SEBF.01 |
Silencing element binding factor - transcriptional repressor |
| P$BZIP |
Plant G-box/C-box BZIP Proteins |
P$HBP1B.01 |
Wheat bZIP transcription factor HBP1B (histone gene binding protein 1b) |
| P$UPRE.01 |
UPRE (unfolded protein response element) like motif |
| P$CAAT |
CCAAT binding factors |
P$CAAT.01 |
CCAAT-box in plant promoters |
| P$CAAT.02 |
CCAAT-box in plant promoters |
| P$DPBF |
Dc3 promoter binding factors |
P$DPBF.01 |
bZIP factors DPBF-1 and 2 (Dc3 promoter binding factor-1 and 2) |
| P$ERSE |
ER stress-response elements |
P$ERSE_I.01 |
ERSE I (ER stress-response element I)-like motif |
| P$GAGA |
GAGA elements |
P$GAGABP.01 |
(GA)n/(CT)n binding proteins (GBP, soybean; BBR, barley) |
| P$GTBX |
GT-box elements |
P$GT1.01 |
GT1-Box binding factors with a trihelix DNA-binding domain |
| P$SF1.01 |
S1F, site 1 binding factor of spinach rps1 promoter |
| P$IBOX |
Plant I-Box sites |
P$GATA.01 |
Class I GATA factors |
| P$LEGB |
Legumin Box family |
P$RY.01 |
RY and Sph motifs conserved in seed-specific promoters |
| P$MIIG |
MYB IIG-type binding sites |
P$ATMYB15.01 |
R2R3-type myb-like transcription factor (IIG-type binding site) |
| P$ATMYB84.01 |
R2R3-type myb-like transcription factor (IIG-type binding site) |
| P$PALBOXL.01 |
Cis-acting element conserved in various PAL and 4CL promoters |
| P$PALBOXP.01 |
Putative cis-acting element in various PAL and 4CL gene promoters |
| P$MYBL |
MYB-like proteins |
P$ATMYB77.01 |
R2R3-type myb-like transcription factor (I-type binding site) |
| P$MYBS |
MYB proteins with single DNA binding domains |
P$OSMYBS.01 |
Rice MYB proteins with single DNA binding domains, binding to the amylase element (TATCCA) |
| P$OCSE |
Enhancer element first identified in the promoter of the octopine synthase gene (OCS) of the Agrobacterium tumefaciens T-DNA |
P$OCSTF.01 |
bZIP transcription factor binding to OCS-elements |
| P$PALA |
Conserved box A in PAL and 4CL gene promoters |
P$PALBOXA.01 |
Putative cis-acting element on various PAL and 4CL gene promoters |
| P$PALB |
PAL-box |
P$NTLIM1.01 |
LIM domain protein binding to a PAL-box like sequence |
| P$PSRE |
Pollen-specific regulatory elements |
P$GAAA.01 |
GAAA motif involved in pollen specific transcriptional activation |
| P$SALT |
Salt/drought responsive elements |
P$ALFIN1.02 |
Zinc-finger protein in alfalfa roots, regulates salt tolerance |
| P$SEF |
Soybean embryo factor 3 |
P$SEF3.01 |
SEF3, Soybean embryo factor 3 |
| P$TALE |
TALE (3-aa acid loop extension) class homeodomain proteins |
P$HVH21.01 |
Homeodomain protein of the Knotted class1 |
| P$TBPF |
TATA binding protein factor |
P$TATA.01 |
Plant TATA box |
| P$TATA.02 |
Plant TATA box |
| P$TEFB |
TEF-box |
P$TEF1.01 |
TEF cis acting elements in both RNA polymerase II-dependent promoters and rDNA spacer sequences |
| P$WBXF |
W Box family |
P$ERE.01 |
Elicitor response element |
