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Matrix Family Library Version 11.2

[New weight matrices] [Matrices modified]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 11.2 (January 2020) contains 2142 weight matrices in 532 families classified into the following groups:

The vertebrate group represents binding site descriptions of 10736 transcription factors: The plant group represents binding site descriptions of 1206 transcription factors from several plant species.

The fungi group represents binding site descriptions of 140 transcription factors from Saccharomyces cerevisiae and Schizosaccharomyces pombe.


New weight matrices

Vertebrates

Family Family Information Matrix Name Matrix Information
V$CIZF CAS interating zinc finger protein V$ZNF384.01 Zinc finger protein 384 (Cas-interacting zinc finger protein - CIZ)
V$CTCF CTCF and BORIS gene family, transcriptional regulators with 11 highly conserved zinc finger domains V$CTCF.06 Insulator protein CTCF (CCCTC-binding factor)
V$DMRT DM domain-containing transcription factors V$DMRT1.02 Doublesex and mab-3 related transcription factor 1
V$DMRT1.03 Doublesex and mab-3 related transcription factor 1
V$EGRF EGR/nerve growth factor induced protein C & related factors V$EGR2.03 Early growth response 2
V$FEZF Fez family zinc finger proteins V$FEZF1.01 Fez family zinc finger protein 1
V$GLIF GLI zinc finger family V$GLIS1.02 GLIS family zinc finger 1
V$HZF9 Human zinc finger protein HZF9 V$ZNF273.01 Zinc finger protein 273
V$IKRS Ikaros zinc finger family V$IKZF3.01 IKAROS family zinc finger 3 (Aiolos)
V$KID1 Kidney, ischemia, and developmentally-regulated protein 1 V$ZNF354A.01 Zinc finger protein 354A (EZNF)
V$KLFS Krueppel like transcription factors V$EKLF.03 Erythroid Krueppel like factor (EKLF, KLF1)
V$KKLF.02 Kidney-enriched krueppel-like factor (KLF15)
V$KLF12.02 Krueppel-like factor 12 (AP-2rep)
V$KLF14.01 Kruppel like factor 14 (basic transcription element-binding protein 5 - BTEB5)
V$KLF7.03 Kruppel like factor 7 (UKLF)
V$KOX8 Krueppel C2H2-type zinc-finger protein KOX8 V$ZNF708.01 Zinc finger protein 708
V$KS1E KRAB/zinc finger suppressor protein 1 binding element V$ZNF382.01 Zinc finger protein 382 (KS1)
V$ZNF382.02 Zinc finger protein 382 (KS1)
V$MAZF Myc associated zinc fingers V$MAZ.04 Myc associated zinc finger protein (MAZ)
V$PATZ1.01 POZ/BTB and AT hook containing zinc finger 1 (MAZR)
V$MIPU Myocardial ischemic preconditioning upregulated V$ZNF667.01 Zinc finger protein 667
V$MIRF Mammalian-wide interspersed repeats - MIRs - binding factor V$ZNF768.01 Zinc finger protein 768
V$ZNF768.02 Zinc finger protein 768
V$OSRF Odd-skipped related factors V$OSR2.02 Odd-skipped related 2
V$PPNS Composite binding site for TALE homeoproteins Pbx1:Prep1 and trimeric NFY recruiting SP2 as cofactor DECA_EXT.01 Decamer Pbx1:Prep1 motif (TALE) extended by an adjacent NFY-binding site. Pbx1:Prep1/NFY complex recruits SP2
V$PRDF Positive regulatory domain I binding factor V$PRDM1.03 PRDI-binding factor-1
V$RP58 RP58 (ZFP238) zinc finger protein V$ZBTB18.01 Zinc finger and BTB domain containing 18 (transcriptional repressor RP58)
V$SNAI Snail family of zinc finger transcription factors binding to E-box motifs V$SCRT1.01 Scratch family transcriptional repressor 1
V$SNAI1.01 Snail family transcriptional repressor 1 (SLUGH2)
V$SP1F GC-Box factors SP1/GC V$SP1.04 Stimulating protein 1, ubiquitous zinc finger transcription factor
V$SP2.02 Sp2 transcription factor
V$SP4.03 Sp4 transcription factor
V$TIEG.02 TGFB-inducible early growth response protein 1 (KLF10)
V$STAF Selenocysteine tRNA activating factor V$ZNF76.01 Zinc finger protein 76
V$TZAP Telomeric zinc finger associated protein V$ZBTB48.01 Zinc finger and BTB domain containing 48 (GLI-Kruppel family member HKR3)
V$VEZF Vascular endothelial zinc finger factor V$VEZF1.01 Vascular endothelial zinc finger 1
V$YY1F Activator/repressor binding to transcription initiation site V$REX1.02 REX1 transcription factor, zinc finger protein 42
V$YY1.04 Transcription factor yin yang 1
V$ZF01 C2H2 zinc finger transcription factors 1 V$ZNF350.01 Zinc finger protein 350 (zinc finger and BRCA1-interacting protein with a KRAB domain 1 - ZBRK1)
V$ZF02 C2H2 zinc finger transcription factors 2 V$ZNF281.01 Zinc finger protein 281 (ZNP99)
V$ZF04 C2H2 zinc finger transcription factors 4 V$ZBTB6.01 Zinc finger and BTB domain containing 6 (zinc finger protein with interaction domain - ZID)
V$ZF07 C2H2 zinc finger transcription factors 7 V$ZNF263.03 Zinc finger protein 263, ZKSCAN12 (zinc finger protein with KRAB and SCAN domains 12)
V$ZF27 C2H2 zinc finger transcription factors 27 V$ZNF140.02 Zinc finger protein 140
V$ZF28 C2H2 zinc finger transcription factors 28 V$KOX28.01 Zinc finger protein KOX28 (ZNF30)
V$ZF29 C2H2 zinc finger transcription factors 29 V$ZNF213.01 Zinc finger protein with KRAB and SCAN domains 21
V$ZF30 C2H2 zinc finger transcription factors 30 V$ZFP30.01 Zinc finger protein 30 (ZNF 745)
V$ZF31 C2H2 zinc finger transcription factors 31 V$ZNF250.01 Zinc finger protein 250
V$ZF32 C2H2 zinc finger transcription factors 32 V$ZNF16.01 Zinc finger protein 16
V$ZF33 C2H2 zinc finger transcription factors 33 V$ZBTB24.01 Zinc finger and BTB domain containing 24
V$ZBTB24.02 Zinc finger and BTB domain containing 24
V$ZF34 C2H2 zinc finger transcription factors 34 V$ZNF34.01 Zinc finger protein 34 (KOX 32)
V$ZF35 C2H2 zinc finger transcription factors 35 V$ZNF35.02 Zinc finger protein 35
V$ZF36 C2H2 zinc finger transcription factors 36 V$ZNF200.01 Zinc finger protein 200
V$ZF37 C2H2 zinc finger transcription factors 37 V$ZNF37A.01 Zinc finger protein 37 alpha (KOX21)
V$ZF38 C2H2 zinc finger transcription factors 38 V$ZBTB38.01 Methyl-CpG bindng protein ZBTB38 (Zinc finger and BTB domain containing 38)
V$ZF39 C2H2 zinc finger transcription factors 39 V$ZNF524.01 Zinc finger protein 524
V$ZF40 C2H2 zinc finger transcription factors 40 V$ZNF419.01 Zinc finger protein 419 (ZAPHIR)
V$ZF42 C2H2 zinc finger transcription factors 42 V$ZNF692.01 Zinc finger protein 692 (AICAR responsive element binding protein - AREBP)
V$ZF43 C2H2 zinc finger transcription factors 43 V$ZNF322.01 Zinc finger protein 322, HLA complex group 12 (HCG12)
V$ZF44 C2H2 zinc finger transcription factors 44 V$ZNF175.01 Zinc finger protein 175 (OTK18)
V$ZF45 C2H2 zinc finger transcription factors 45 V$ZNF134.01 Zinc finger protein 134 (pHZ-15)
V$ZF46 C2H2 zinc finger transcription factors 46 V$ZNF436.01 Zinc finger protein 436 (DNA-binding protein ZFP46)
V$ZF47 C2H2 zinc finger transcription factors 47 V$ZNF449.01 Zinc finger protein 449 (ZSCAN19)
V$ZF58 C2H2 zinc finger transcription factors 58 V$ZNF513.01 Zinc finger protein 513
V$ZF5F ZF5 POZ domain zinc finger V$ZBTB14.01 Zinc finger and BTB domain containing 14 (ZFP-5, ZFP161)
V$ZF64 C2H2 zinc finger transcription factors 64 V$ZFP64.01 ZFP64 zinc finger protein (ZNF338)
V$ZFP64.02 ZFP64 zinc finger protein (ZNF338)
V$ZFP64.03 ZFP64 zinc finger protein (ZNF338)
V$ZF82 C2H2 zinc finger transcription factors 82 V$ZFP82.01 Zinc finger protein 82 (ZNF 545)
V$ZF85 C2H2 zinc finger transcription factors 85 V$ZNF85.01 Zinc finger protein 85 (HPF4, HTF1)

General Core Promoter Elements

Family Family Information Matrix Name Matrix Information
O$TF3A General transcription factor IIIA, GTF3A O$TFIIIA.02 General transcription factor IIIA (GTF3A)


Weight matrices modified

The following weight matrices have been replaced by better matrices: