Genomatix-Logo
Overview of Help-Pages
GEMS Launcher Logo

Matrix Family Library Version 11.3

[New weight matrices] [Matrices removed]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 11.3 (January 2021) contains 2181 weight matrices in 542 families classified into the following groups:

The vertebrate group represents binding site descriptions of 11001 transcription factors: The plant group represents binding site descriptions of 1213 transcription factors from several plant species.

The fungi group represents binding site descriptions of 140 transcription factors from Saccharomyces cerevisiae and Schizosaccharomyces pombe.


New weight matrices

Vertebrates

Family Family Information Matrix Name Matrix Information
V$AP1R MAF and AP1 related factors V$NFE2L1.01 Nuclear factor, erythroid 2 like 1, TCF11
V$NFE2L3.01 Nuclear factor, erythroid 2 like 3, NRF3
V$CASZ Castor zinc finger V$CASZ1.01 Castor zinc finger 1
V$CDC5 Schizosaccharomyces pombe cdc5-related protein V$CDC5L.01 Cell division cycle 5 like
V$CGGB CGG-binding protein V$CGGBP1.01 CGG triplet repeat binding protein 1
V$CLOX CLOX and CLOX homology (CDP) factors V$CUX1.02 Cut like homeobox 1
V$CUX2.02 Cut like homeobox 2
V$CNBP Cellular nucleic acid binding protein V$CNBP.01 CCHC-type zinc finger nucleic acid binding protein, zinc finger protein 9 (a cellular retroviral nucleic acid binding protein)
V$CTBP CT element binding protein V$HNRNPK.01 Heterogeneous nuclear ribonucleoprotein K, single strand binding protein
V$DEAF Homolog to deformed epidermal autoregulatory factor-1 from D. melanogaster V$DEAF1.01 Deformed epidermal autoregulatory factor 1 (DEAF1, NUDR) - direct repeats with a 2bp spacer
V$DEAF1.02 Deformed epidermal autoregulatory factor 1 (DEAF1, NUDR) - direct repeats with a 4bp spacer
V$DEAF1.03 Deformed epidermal autoregulatory factor 1 (DEAF1, NUDR) - direct repeats with a 5bp spacer
V$DLXF Distal-less homeodomain transcription factors V$DLX5.02 Distal-less homeobox 5
V$DPZF Dendritic cell-derived BTB/POZ zinc finger V$ZBTB20.01 Zinc finger and BTB domain containing 20
V$FEZF Fez family zinc finger proteins V$FEZF1.02 Fez family zinc finger protein 1
V$GFI1 Growth factor independence transcriptional repressor V$GFI1.03 Growth factor independence 1
V$GFI1B.02 Growth factor independence 1 zinc finger protein Gfi-1B
V$GLIF GLI zinc finger family V$GLI.01 GLI transcription factors GLI1 and GLI3
V$GLIS2.02 GLI-Kruppel family member GLI2
V$GMEB Glucocorticoid modulatory element binding proteins V$GMEB1.01 Glucocorticoid modulatory element binding protein 1
V$GMEB2.02 Glucocorticoid modulatory element binding protein 2
V$GZF1 GDNF-inducible zinc finger gene 1 V$GZF1.02 GDNF-inducible zinc finger protein 1 (ZNF336)
V$HIFF Hypoxia inducible factor, bHLH/PAS protein family V$CLOCK.01 Circadian regulator CLOCK (Circadian Locomotor Output Cycles Kaput)
V$CLOCK_BMAL1.02 Binding site of Clock/BMAL1 heterodimer, NPAS2/BMAL1 heterodimer
V$CLOCK_BMAL1.03 Binding site of Clock/BMAL1 heterodimer, NPAS2/BMAL1 heterodimer
V$EPAS1.01 Endothelial PAS domain protein 1 (HIF2A)
V$HIF1A.01 Hypoxia-inducible factor 1 alpha
V$HNF1 Hepatic Nuclear Factor 1 V$HNF1B.01 Hepatocyte nuclear factor 1 beta (TCF2)
V$HNFP Histone nuclear factor P V$HINFP.02 Histone H4 transcription factor
V$HOMF Homeodomain transcription factors V$HHEX.02 Hematopoietically expressed homeobox
V$MYOD Myoblast determining factors V$BHLHA15.02 Muscle, intestine and stomach expression 1 (MIST1)
V$NFKB Nuclear factor kappa B/c-rel V$HIVEP.02 Human immunodeficiency virus type I enhancer binding protein 1
V$NREB Negative regulatory element-binding protein V$SON.01 SON DNA and RNA binding protein
V$PARF PAR/bZIP family V$HLF.02 Hepatic leukemia factor
V$PTTG Pituitary tumor-transforming gene V$PTTG1.01 PTTG1 regulator of sister chromatid separation, securin
V$TRIS Tristanin, a member of the positive regulatory domain (PRD) family of zinc-finger transcription factors V$PRDM10.01 PR/SET domain 10
V$ZF45 C2H2 zinc finger transcription factors 45 V$ZNF10.01 Zinc finger protein 10, KOX1
V$ZF48 C2H2 zinc finger transcription factors 48 V$PARIS.01 Parkin-interacting substrate (ZNF746)
V$ZF91 C2H2 zinc finger transcription factors 91 V$ZFP91.01 RING-type E3 ubiquitin transferase, zinc finger protein 91
V$ZICF Members of ZIC-family, zinc finger protein of the cerebellum V$ZIC3.04 Zinc finger protein of the cerebellum 3



Weight matrices removed

The following weight matrices have been removed: