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ElDorado Statistics for Danio rerio Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

GRCz11
GRCz11
GRCz11
GRCz11
GRCz10
NCBI build 5
NCBI build 4

# Contigs

1,923
1,923
1,923
1,923
1,061
1,133
11,542

# Basepairs

1,679,203,469
1,679,203,469
1,679,203,469
1,679,203,469
1,371,719,383
1,412,464,843
1,480,771,230

# Gene Loci

33,953
33,953
37,010
37,013
32,968
27,712
28,927

# Primary Transcripts

112,628
112,626
124,045
124,045
102,686
61,140
65,148
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
1,779
1,773
2,093
2,197
1,790
881
774
# bronze
110,849
110,853
121,952
121,848
100,896
60,259
64,374

# Promoter Regions

70,190
69,843
71,420
72,118
63,062
50,684
52,534
# promoters associated with transcript
61,609
61,609
62,368
62,352
52,655
41,960
45,595
# promoters based on Comparative Genomics
8,581
8,234
9,052
9,766
10,407
8,724
6,939

# PromoterInspector Predictions

16,959
16,959
16,959
16,959
14,271
14,718
14,858

# Homology groups

14,240
13,515
13,802
13,774
14,155
13,787
13,659

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

15,039,227
15,039,227
14,371,816
14,371,816
14,342,815
1,219,609
499,984
# peptides affected by SNPs
342,606
342,606
312,973
312,905
281,206
28,931
14,674
# TF sites affected by SNPs
not available
not available
not available
87,141,233
85,316,220
6,285,484
2,525,670

# Module matches in promoters

1,106,458
1,031,326
1,037,667
1,055,224
891,424
366,058
365,726

# SMARs

441,555
441,555
441,555
441,555
357,335
366,496
385,126

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

835
835
835
824
818
846
855
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
317,266
317,353
308,907
308,886
239,027
175,234
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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