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ElDorado Statistics for Xenopus tropicalis Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

UCB Xtro 10.0
UCB Xtro 10.0
Xenopus tropicalis v9.1
Xenopus tropicalis v9.1
Xenopus tropicalis v9.1
NCBI build 1
NCBI build 1

# Contigs

167
167
6,822
6,822
6,822
19,550
19,550

# Basepairs

1,451,301,209
1,451,301,209
1,440,398,454
1,440,398,454
1,440,398,454
1,511,735,326
1,511,735,326

# Gene Loci

22,998
22,998
24,786
24,455
24,453
22,834
24,153

# Primary Transcripts

96,756
96,758
94,034
62,356
62,346
49,536
46,798
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
5,715
5,677
4,395
2,945
2,956
1,407
1,709
# bronze
91,041
91,081
89,639
59,411
59,390
48,129
45,089

# Promoter Regions

61,011
60,568
59,124
49,690
49,963
41,797
45,166
# promoters associated with transcript
50,426
50,426
48,525
37,711
37,748
32,191
35,628
# promoters based on Comparative Genomics
10,585
10,142
10,599
11,979
12,215
9,606
9,538

# PromoterInspector Predictions

34,383
34,383
26,546
26,546
26,546
27,212
27,212

# Homology groups

15,438
14,536
14,131
14,198
14,197
12,018
11,992

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

not available
not available
not available
not available
not available
not available
not available
# peptides affected by SNPs
not available
not available
not available
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

1,063,713
988,006
889,897
734,688
723,525
316,085
321,697

# SMARs

96,728
96,728
96,985
96,985
96,985
95,829
95,829

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

312
312
251
247
261
262
not available
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
313,146
313,285
278,951
148,651
146,747
118,017
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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