|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
UCB Xtro 10.0 |
UCB Xtro 10.0 |
Xenopus tropicalis v9.1
|
Xenopus tropicalis v9.1
|
Xenopus tropicalis v9.1
|
NCBI build 1 |
NCBI build 1
|
|
# Contigs |
167 |
167 |
6,822
|
6,822
|
6,822
|
19,550 |
19,550
|
|
# Basepairs |
1,451,301,209 |
1,451,301,209 |
1,440,398,454
|
1,440,398,454
|
1,440,398,454
|
1,511,735,326 |
1,511,735,326
|
|
# Gene Loci |
22,998 |
22,998 |
24,786
|
24,455
|
24,453
|
22,834 |
24,153
|
|
# Primary Transcripts |
96,756 |
96,758 |
94,034
|
62,356
|
62,346
|
49,536 |
46,798
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
5,715 |
5,677 |
4,395
|
2,945
|
2,956
|
1,407 |
1,709
|
|
# bronze
|
91,041 |
91,081 |
89,639
|
59,411
|
59,390
|
48,129 |
45,089
|
|
# Promoter Regions |
61,011 |
60,568 |
59,124
|
49,690
|
49,963
|
41,797 |
45,166
|
|
# promoters associated with transcript
|
50,426 |
50,426 |
48,525
|
37,711
|
37,748
|
32,191 |
35,628
|
|
# promoters based on Comparative Genomics
|
10,585 |
10,142 |
10,599
|
11,979
|
12,215
|
9,606 |
9,538
|
|
# PromoterInspector Predictions |
34,383 |
34,383 |
26,546
|
26,546
|
26,546
|
27,212 |
27,212
|
|
# Homology groups |
15,438 |
14,536 |
14,131
|
14,198
|
14,197
|
12,018 |
11,992
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# peptides affected by SNPs
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Module matches in promoters |
1,063,713 |
988,006 |
889,897
|
734,688
|
723,525
|
316,085 |
321,697
|
|
# SMARs |
96,728 |
96,728 |
96,985
|
96,985
|
96,985
|
95,829 |
95,829
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# L1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
312 |
312 |
251
|
247
|
261
|
262 |
not available
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
313,146 |
313,285 |
278,951
|
148,651
|
146,747
|
118,017 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |