|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
| Genome Version |
Pop tri v3 |
Pop tri v3 |
Pop tri v3
|
Pop tri v3
|
Poptr 2.0
|
NCBI build 2 |
NCBI build 1c
|
|
# Contigs |
1,447 |
1,447 |
1,447
|
1,447
|
2,514
|
20 |
20
|
|
# Basepairs |
434,289,848 |
434,289,848 |
434,289,848
|
434,289,848
|
417,286,671
|
307,997,801 |
307,997,801
|
|
# Gene Loci |
31,324 |
31,324 |
34,227
|
34,227
|
41,310
|
29,059 |
29,001
|
|
# Primary Transcripts |
55,224 |
55,224 |
60,073
|
60,073
|
46,326
|
33,256 |
33,743
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
55,224 |
55,224 |
60,073
|
60,073
|
46,326
|
33,256 |
33,743
|
|
# Promoter Regions |
36,103 |
36,025 |
39,812
|
39,879
|
45,016
|
33,031 |
33,130
|
|
# promoters associated with transcript
|
34,805 |
34,805 |
37,405
|
37,396
|
42,119
|
30,542 |
31,318
|
|
# promoters based on Comparative Genomics
|
1,298 |
1,220 |
2,407
|
2,483
|
2,897
|
2,489 |
1,812
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
12,692 |
11,147 |
11,557
|
11,660
|
11,993
|
9,816 |
9,851
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# peptides affected by SNPs
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Module matches in promoters |
47,939 |
47,754 |
52,616
|
55,123
|
117,995
|
31,308 |
31,276
|
|
# SMARs |
112,888 |
112,888 |
112,888
|
112,888
|
109,227
|
78,994 |
78,994
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
Matrix-Library |
Version 11.4 (627 plant matrices) |
Version 11.3 (627 plant matrices) |
Version 11.2 (627 plant matrices) |
Version 11.1 (627 plant matrices) |
Version 11.0 (621 plant matrices) |
Version 9.1 (209 plant matrices) |
Version 8.4 (182 plant matrices) |
|
Module-Library |
Version 6.6 (111 plant modules) |
Version 6.5 (111 plant modules) |
Version 6.4 (111 plant modules) |
Version 6.3 (111 plant modules) |
Version 6.2 (111 plant modules) |
Version 5.7 (97 plant modules) |
Version 5.5 (86 plant modules) |
|
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