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ElDorado Statistics for Populus trichocarpa Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011
Genome Version
Pop tri v3
Pop tri v3
Pop tri v3
Pop tri v3
Poptr 2.0
NCBI build 2
NCBI build 1c

# Contigs

1,447
1,447
1,447
1,447
2,514
20
20

# Basepairs

434,289,848
434,289,848
434,289,848
434,289,848
417,286,671
307,997,801
307,997,801

# Gene Loci

31,324
31,324
34,227
34,227
41,310
29,059
29,001

# Primary Transcripts

55,224
55,224
60,073
60,073
46,326
33,256
33,743
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
55,224
55,224
60,073
60,073
46,326
33,256
33,743

# Promoter Regions

36,103
36,025
39,812
39,879
45,016
33,031
33,130
# promoters associated with transcript
34,805
34,805
37,405
37,396
42,119
30,542
31,318
# promoters based on Comparative Genomics
1,298
1,220
2,407
2,483
2,897
2,489
1,812

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

12,692
11,147
11,557
11,660
11,993
9,816
9,851

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

not available
not available
not available
not available
not available
not available
not available
# peptides affected by SNPs
not available
not available
not available
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

47,939
47,754
52,616
55,123
117,995
31,308
31,276

# SMARs

112,888
112,888
112,888
112,888
109,227
78,994
78,994

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

not available
not available
not available
not available
not available
not available
not available

Matrix-Library

Version 11.4
(627 plant matrices)
Version 11.3
(627 plant matrices)
Version 11.2
(627 plant matrices)
Version 11.1
(627 plant matrices)
Version 11.0
(621 plant matrices)
Version 9.1
(209 plant matrices)
Version 8.4
(182 plant matrices)

Module-Library

Version 6.6
(111 plant modules)
Version 6.5
(111 plant modules)
Version 6.4
(111 plant modules)
Version 6.3
(111 plant modules)
Version 6.2
(111 plant modules)
Version 5.7
(97 plant modules)
Version 5.5
(86 plant modules)

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