|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
| Genome Version |
Glycine max v4.0 |
Glycine max v2.1 |
Glycine max v2.1
|
Glycine max v2.1
|
Glycine max v2.0
|
Glyma 1 |
Glyma 1
|
|
# Contigs |
284 |
1,192 |
1,192
|
1,192
|
1,191
|
1,168 |
1,168
|
|
# Basepairs |
978,941,695 |
979,046,046 |
979,046,046
|
979,046,046
|
978,971,636
|
973,492,571 |
973,492,571
|
|
# Gene Loci |
47,068 |
47,147 |
47,147
|
51,444
|
52,206
|
65,998 |
65,704
|
|
# Primary Transcripts |
83,669 |
80,273 |
80,273
|
88,224
|
86,836
|
81,013 |
81,614
|
|
# gold
|
4,403 |
4,383 |
4,383
|
4,383
|
4,383
|
4,389 |
4,379
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
79,266 |
75,890 |
75,890
|
83,841
|
82,453
|
76,624 |
77,235
|
|
# Promoter Regions |
53,580 |
53,912 |
54,668
|
59,145
|
60,461
|
71,792 |
71,691
|
|
# promoters associated with transcript
|
52,260 |
52,655 |
51,972
|
56,518
|
57,194
|
68,102 |
69,224
|
|
# promoters based on Comparative Genomics
|
1,320 |
1,257 |
2,696
|
2,627
|
3,267
|
3,690 |
2,467
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
14,525 |
12,838 |
13,463
|
13,379
|
13,656
|
14,010 |
14,775
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
4,174 |
4,172
|
|
# SNPs |
not available
|
not available
|
14,016,346
|
14,016,346
|
13,522,115
|
6,302,448 |
203
|
|
# peptides affected by SNPs
|
not available
|
not available
|
not available
|
379,355
|
371,640
|
71,275 |
44
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
44,072,027
|
42,227,276
|
10,331,512 |
261
|
|
# Module matches in promoters |
76,850 |
76,861 |
78,144
|
88,513
|
180,265
|
74,660 |
71,342
|
|
# SMARs |
223,570 |
223,842 |
223,842
|
223,842
|
223,846
|
223,966 |
223,966
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
725 |
729 |
729
|
613
|
613
|
573 |
260
|
|
Matrix-Library |
Version 11.4 (627 plant matrices) |
Version 11.3 (627 plant matrices) |
Version 11.2 (627 plant matrices) |
Version 11.1 (627 plant matrices) |
Version 11.0 (621 plant matrices) |
Version 9.1 (209 plant matrices) |
Version 8.4 (182 plant matrices) |
|
Module-Library |
Version 6.6 (111 plant modules) |
Version 6.5 (111 plant modules) |
Version 6.4 (111 plant modules) |
Version 6.3 (111 plant modules) |
Version 6.2 (111 plant modules) |
Version 5.7 (97 plant modules) |
Version 5.5 (86 plant modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |