|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
| Genome Version |
MSU release 7 |
MSU release 7 |
MSU release 7
|
MSU release 7
|
MSU release 7
|
MSU release 7 |
TIGR release 6
|
|
# Contigs |
14 |
14 |
14
|
14
|
14
|
14 |
13
|
|
# Basepairs |
373,870,564 |
373,870,564 |
373,870,564
|
373,870,564
|
373,870,564
|
373,870,564 |
372,808,087
|
|
# Gene Loci |
24,943 |
32,677 |
35,219
|
35,219
|
33,585
|
30,807 |
30,669
|
|
# Primary Transcripts |
33,700 |
79,931 |
87,341
|
87,341
|
83,944
|
61,640 |
63,370
|
|
# gold
|
33,026 |
33,026 |
33,026
|
33,026
|
33,026
|
32,479 |
32,221
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
674 |
46,905 |
54,315
|
54,315
|
50,918
|
29,161 |
31,149
|
|
# Promoter Regions |
28,660 |
42,405 |
46,044
|
46,245
|
45,019
|
38,578 |
38,610
|
|
# promoters associated with transcript
|
27,739 |
41,727 |
42,791
|
42,736
|
40,919
|
34,201 |
36,113
|
|
# promoters based on Comparative Genomics
|
921 |
678 |
3,253
|
3,509
|
4,100
|
4,377 |
2,497
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
9,475 |
11,805 |
11,167
|
11,887
|
11,836
|
11,513 |
11,628
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
29,104 |
28,917
|
|
# SNPs |
11,484,044 |
11,484,044 |
12,126,652
|
11,259,723
|
11,246,034
|
9,747,182 |
4,205,157
|
|
# peptides affected by SNPs
|
183,174 |
962,132 |
959,898
|
933,616
|
897,943
|
612,914 |
335,446
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
30,601,755
|
30,146,069
|
13,852,245 |
5,386,696
|
|
# Module matches in promoters |
51,607 |
77,169 |
83,882
|
91,014
|
131,370
|
38,529 |
40,851
|
|
# SMARs |
48,792 |
48,792 |
48,792
|
48,792
|
48,792
|
48,792 |
48,693
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
620 |
620 |
620
|
608
|
608
|
608 |
481
|
|
Matrix-Library |
Version 11.4 (627 plant matrices) |
Version 11.3 (627 plant matrices) |
Version 11.2 (627 plant matrices) |
Version 11.1 (627 plant matrices) |
Version 11.0 (621 plant matrices) |
Version 9.1 (209 plant matrices) |
Version 8.4 (182 plant matrices) |
|
Module-Library |
Version 6.6 (111 plant modules) |
Version 6.5 (111 plant modules) |
Version 6.4 (111 plant modules) |
Version 6.3 (111 plant modules) |
Version 6.2 (111 plant modules) |
Version 5.7 (97 plant modules) |
Version 5.5 (86 plant modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |