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ElDorado Statistics for Macaca mulatta Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

Mmul 10
Mmul 10
Mmul 10
Mmul 8.0.1
Mmul 8.0.1
NCBI build 2
NCBI build 1

# Contigs

2,939
2,939
2,939
284,728
284,728
122,145
22

# Basepairs

2,971,331,530
2,971,331,530
2,971,331,530
3,236,224,332
3,236,224,332
3,097,387,291
2,863,681,749

# Gene Loci

24,523
24,541
34,884
28,670
28,669
27,524
25,258

# Primary Transcripts

118,127
118,466
132,349
105,044
105,058
67,232
92,114
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
48,784
48,598
51,008
37,870
37,912
18,507
19,529
# bronze
69,343
69,868
81,341
67,174
67,146
48,725
72,585

# Promoter Regions

99,502
99,000
108,932
102,343
102,307
85,105
81,951
# promoters associated with transcript
50,981
51,084
59,881
52,611
52,671
43,410
67,837
# promoters based on Comparative Genomics
48,521
47,916
49,051
49,732
49,636
41,695
14,114

# PromoterInspector Predictions

21,408
21,408
21,408
20,197
20,227
17,307
15,661

# Homology groups

17,800
17,257
19,501
18,732
18,414
18,595
16,820

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

47,140,899
47,140,899
not available
50,168,059
50,168,059
2,995,095
736
# peptides affected by SNPs
1,432,918
1,436,412
not available
732,084
732,472
15,787
56
# TF sites affected by SNPs
not available
not available
not available
233,303,843
227,477,024
12,395,726
2,634

# Module matches in promoters

2,450,398
2,288,606
2,391,831
2,099,856
2,070,973
905,246
776,579

# SMARs

340,519
340,519
340,519
345,736
345,736
335,173
323,276

# Repeats

2,506,652
2,504,076
2,500,623
1,547,868
1,547,518
1,463,681
1,377,429
# ALU
1,509,846
1,509,846
1,509,846
1,141,593
1,141,593
1,067,840
989,036
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
927,734
927,734
921,705
344,585
344,219
334,199
331,499
# THE
69,072
66,496
69,072
61,690
61,706
61,642
56,894

# microRNAs

659
659
659
646
646
781
461
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
365,651
366,053
355,513
271,564
not available
188,890
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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