|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
mRatBN7.2 |
Rnor 6.0 |
Rnor 6.0
|
Rnor 6.0
|
Rnor 6.0
|
NCBI build 5 |
NCBI build 4
|
|
# Contigs |
176 |
955 |
955
|
955
|
955
|
2,739 |
22
|
|
# Basepairs |
2,647,915,728 |
2,870,184,193 |
2,870,184,193
|
2,870,184,193
|
2,870,184,193
|
2,909,698,938 |
2,718,897,334
|
|
# Gene Loci |
24,072 |
25,571 |
32,893
|
32,894
|
32,895
|
26,886 |
25,564
|
|
# Primary Transcripts |
99,688 |
80,513 |
115,540
|
115,601
|
115,601
|
40,246 |
73,554
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
28,206 |
19,595 |
23,340
|
24,583
|
24,747
|
7,885 |
10,640
|
|
# bronze
|
71,482 |
60,918 |
92,200
|
91,018
|
90,854
|
32,361 |
62,914
|
|
# Promoter Regions |
82,737 |
79,984 |
88,469
|
90,526
|
91,304
|
67,884 |
67,809
|
|
# promoters associated with transcript
|
47,593 |
44,839 |
52,910
|
52,835
|
52,916
|
31,615 |
54,873
|
|
# promoters based on Comparative Genomics
|
35,144 |
35,145 |
35,559
|
37,691
|
38,388
|
36,269 |
12,936
|
|
# PromoterInspector Predictions |
14,182 |
13,730 |
13,730
|
13,667
|
13,730
|
11,284 |
10,476
|
|
# Homology groups |
18,845 |
18,829 |
18,748
|
18,837
|
18,842
|
19,276 |
18,355
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
4,631,590 |
4,696,635 |
4,859,617
|
4,595,134
|
4,595,134
|
4,572,262 |
2,572,483
|
|
# peptides affected by SNPs
|
86,569 |
59,767 |
74,413
|
68,629
|
68,628
|
17,611 |
16,213
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
20,732,009
|
20,179,591
|
17,397,075 |
9,271,734
|
|
# Module matches in promoters |
1,821,859 |
1,599,573 |
1,696,102
|
1,684,786
|
1,673,548
|
682,583 |
594,527
|
|
# SMARs |
158,324 |
170,107 |
170,107
|
170,107
|
170,107
|
161,305 |
149,187
|
|
# Repeats |
848,706 |
843,111 |
843,111
|
320,242
|
330,195
|
317,854 |
318,990
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
273,742 |
282,540 |
282,540
|
181,402
|
181,402
|
178,751 |
164,994
|
|
# L1
|
574,964 |
560,571 |
560,571
|
138,840
|
148,793
|
139,103 |
153,996
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
517 |
559 |
559
|
558
|
558
|
490 |
405
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
308,501 |
217,565 |
248,714
|
249,031
|
247,152
|
110,406 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
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