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ElDorado Statistics for Rattus norvegicus Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

mRatBN7.2
Rnor 6.0
Rnor 6.0
Rnor 6.0
Rnor 6.0
NCBI build 5
NCBI build 4

# Contigs

176
955
955
955
955
2,739
22

# Basepairs

2,647,915,728
2,870,184,193
2,870,184,193
2,870,184,193
2,870,184,193
2,909,698,938
2,718,897,334

# Gene Loci

24,072
25,571
32,893
32,894
32,895
26,886
25,564

# Primary Transcripts

99,688
80,513
115,540
115,601
115,601
40,246
73,554
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
28,206
19,595
23,340
24,583
24,747
7,885
10,640
# bronze
71,482
60,918
92,200
91,018
90,854
32,361
62,914

# Promoter Regions

82,737
79,984
88,469
90,526
91,304
67,884
67,809
# promoters associated with transcript
47,593
44,839
52,910
52,835
52,916
31,615
54,873
# promoters based on Comparative Genomics
35,144
35,145
35,559
37,691
38,388
36,269
12,936

# PromoterInspector Predictions

14,182
13,730
13,730
13,667
13,730
11,284
10,476

# Homology groups

18,845
18,829
18,748
18,837
18,842
19,276
18,355

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

4,631,590
4,696,635
4,859,617
4,595,134
4,595,134
4,572,262
2,572,483
# peptides affected by SNPs
86,569
59,767
74,413
68,629
68,628
17,611
16,213
# TF sites affected by SNPs
not available
not available
not available
20,732,009
20,179,591
17,397,075
9,271,734

# Module matches in promoters

1,821,859
1,599,573
1,696,102
1,684,786
1,673,548
682,583
594,527

# SMARs

158,324
170,107
170,107
170,107
170,107
161,305
149,187

# Repeats

848,706
843,111
843,111
320,242
330,195
317,854
318,990
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
273,742
282,540
282,540
181,402
181,402
178,751
164,994
# L1
574,964
560,571
560,571
138,840
148,793
139,103
153,996
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

517
559
559
558
558
490
405
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
308,501
217,565
248,714
249,031
247,152
110,406
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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