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ElDorado Statistics for Oryctolagus cuniculus Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1

# Contigs

3,241
3,241
3,241
3,241
3,241
3,241
3,241

# Basepairs

2,737,462,810
2,737,462,810
2,737,462,810
2,737,462,810
2,737,462,810
2,737,462,810
2,737,462,810

# Gene Loci

22,636
22,636
25,150
24,796
24,796
20,987
20,957

# Primary Transcripts

79,815
79,815
82,765
63,497
63,502
38,206
53,492
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
27,885
27,640
28,616
23,190
23,211
9,240
10,066
# bronze
51,930
52,175
54,149
40,307
40,291
28,966
43,426

# Promoter Regions

69,453
68,576
69,525
67,400
67,947
56,162
57,725
# promoters associated with transcript
41,694
41,694
41,812
36,633
36,641
27,313
43,179
# promoters based on Comparative Genomics
27,759
26,882
27,713
30,767
31,306
28,849
14,546

# PromoterInspector Predictions

26,375
26,375
26,375
26,375
26,375
26,375
26,375

# Homology groups

16,600
14,943
14,832
15,144
14,926
14,974
15,098

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

56,914
56,914
35
not available
not available
not available
not available
# peptides affected by SNPs
2,151
2,151
39
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

1,697,326
1,563,140
1,515,035
1,409,759
1,401,073
625,808
551,310

# SMARs

266,922
266,922
266,922
266,922
266,922
266,922
266,922

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

220
220
220
104
104
122
not available
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
205,812
205,893
204,605
142,926
140,733
86,615
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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