|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
Sscrofa 11.1 |
Sscrofa 11.1 |
Sscrofa 11.1
|
Sscrofa 11.1
|
NCBI build 4
|
NCBI build 4 |
NCBI build 2
|
|
# Contigs |
613 |
613 |
613
|
613
|
4,583
|
4,583 |
20
|
|
# Basepairs |
2,501,912,388 |
2,501,912,388 |
2,501,912,388
|
2,501,912,388
|
2,808,525,991
|
2,808,525,991 |
2,262,501,414
|
|
# Gene Loci |
22,024 |
22,024 |
22,024
|
22,344
|
36,020
|
25,090 |
20,972
|
|
# Primary Transcripts |
114,616 |
114,614 |
114,584
|
109,578
|
94,794
|
49,966 |
50,668
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
50,027 |
49,773 |
50,804
|
48,927
|
25,037
|
12,549 |
9,669
|
|
# bronze
|
64,589 |
64,841 |
63,780
|
60,651
|
69,757
|
37,417 |
40,999
|
|
# Promoter Regions |
83,039 |
82,277 |
81,011
|
81,867
|
83,737
|
63,119 |
52,444
|
|
# promoters associated with transcript
|
46,522 |
46,520 |
44,335
|
44,217
|
53,924
|
35,426 |
41,067
|
|
# promoters based on Comparative Genomics
|
36,517 |
35,757 |
36,676
|
37,650
|
29,813
|
27,693 |
11,377
|
|
# PromoterInspector Predictions |
21,557 |
21,557 |
21,557
|
21,500
|
18,344
|
18,344 |
16,607
|
|
# Homology groups |
16,577 |
15,079 |
14,945
|
15,569
|
15,853
|
15,767 |
13,472
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
58,436,652 |
58,436,652 |
206,579
|
54,394,097
|
54,949,283
|
26,187,067 |
5,057
|
|
# peptides affected by SNPs
|
1,205,824 |
1,205,824 |
646
|
1,133,376
|
650,280
|
65,937 |
278
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
251,002,935
|
248,810,451
|
99,953,729 |
16,500
|
|
# Module matches in promoters |
2,233,418 |
2,078,811 |
1,978,903
|
1,888,739
|
1,701,996
|
723,788 |
514,799
|
|
# SMARs |
263,117 |
263,117 |
263,117
|
263,117
|
270,053
|
270,053 |
237,449
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# L1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
396 |
396 |
396
|
376
|
450
|
323 |
213
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
336,236 |
335,995 |
330,756
|
319,865
|
163,179
|
117,442 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
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