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ElDorado Statistics for Sus scrofa Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

Sscrofa 11.1
Sscrofa 11.1
Sscrofa 11.1
Sscrofa 11.1
NCBI build 4
NCBI build 4
NCBI build 2

# Contigs

613
613
613
613
4,583
4,583
20

# Basepairs

2,501,912,388
2,501,912,388
2,501,912,388
2,501,912,388
2,808,525,991
2,808,525,991
2,262,501,414

# Gene Loci

22,024
22,024
22,024
22,344
36,020
25,090
20,972

# Primary Transcripts

114,616
114,614
114,584
109,578
94,794
49,966
50,668
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
50,027
49,773
50,804
48,927
25,037
12,549
9,669
# bronze
64,589
64,841
63,780
60,651
69,757
37,417
40,999

# Promoter Regions

83,039
82,277
81,011
81,867
83,737
63,119
52,444
# promoters associated with transcript
46,522
46,520
44,335
44,217
53,924
35,426
41,067
# promoters based on Comparative Genomics
36,517
35,757
36,676
37,650
29,813
27,693
11,377

# PromoterInspector Predictions

21,557
21,557
21,557
21,500
18,344
18,344
16,607

# Homology groups

16,577
15,079
14,945
15,569
15,853
15,767
13,472

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

58,436,652
58,436,652
206,579
54,394,097
54,949,283
26,187,067
5,057
# peptides affected by SNPs
1,205,824
1,205,824
646
1,133,376
650,280
65,937
278
# TF sites affected by SNPs
not available
not available
not available
251,002,935
248,810,451
99,953,729
16,500

# Module matches in promoters

2,233,418
2,078,811
1,978,903
1,888,739
1,701,996
723,788
514,799

# SMARs

263,117
263,117
263,117
263,117
270,053
270,053
237,449

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

396
396
396
376
450
323
213
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
336,236
335,995
330,756
319,865
163,179
117,442
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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