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ElDorado Statistics for Monodelphis domestica Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2

# Contigs

10
10
10
10
10
10
10

# Basepairs

3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117

# Gene Loci

21,971
21,972
33,025
33,409
33,409
21,639
21,521

# Primary Transcripts

83,886
83,946
101,363
87,851
87,852
39,319
56,853
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
17,128
16,924
18,217
16,879
16,865
6,210
6,268
# bronze
66,758
67,022
83,146
70,972
70,987
33,109
50,585

# Promoter Regions

60,081
59,533
71,960
70,308
71,080
47,700
49,436
# promoters associated with transcript
43,867
43,885
55,287
51,895
51,912
30,677
41,255
# promoters based on Comparative Genomics
16,214
15,648
16,673
18,413
19,168
17,023
8,181

# PromoterInspector Predictions

12,419
12,419
12,419
12,379
12,419
12,419
12,419

# Homology groups

15,747
13,849
14,123
14,008
14,018
13,792
13,933

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

1,161,966
1,161,966
1,161,966
1,161,966
1,161,966
1,163,564
1,163,484
# peptides affected by SNPs
12,236
12,238
13,174
10,384
10,395
1,140
1,725
# TF sites affected by SNPs
not available
not available
not available
5,829,604
5,700,266
4,936,398
4,785,195

# Module matches in promoters

1,356,437
1,266,522
1,450,871
1,354,961
1,342,489
476,907
421,657

# SMARs

538,710
538,710
538,710
538,710
538,710
538,710
538,710

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

777
777
777
551
551
551
150
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
258,478
258,404
254,516
197,008
196,725
132,743
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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