|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
NCBI build 2 |
NCBI build 2 |
NCBI build 2
|
NCBI build 2
|
NCBI build 2
|
NCBI build 2 |
NCBI build 2
|
|
# Contigs |
10 |
10 |
10
|
10
|
10
|
10 |
10
|
|
# Basepairs |
3,502,390,117 |
3,502,390,117 |
3,502,390,117
|
3,502,390,117
|
3,502,390,117
|
3,502,390,117 |
3,502,390,117
|
|
# Gene Loci |
21,971 |
21,972 |
33,025
|
33,409
|
33,409
|
21,639 |
21,521
|
|
# Primary Transcripts |
83,886 |
83,946 |
101,363
|
87,851
|
87,852
|
39,319 |
56,853
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
17,128 |
16,924 |
18,217
|
16,879
|
16,865
|
6,210 |
6,268
|
|
# bronze
|
66,758 |
67,022 |
83,146
|
70,972
|
70,987
|
33,109 |
50,585
|
|
# Promoter Regions |
60,081 |
59,533 |
71,960
|
70,308
|
71,080
|
47,700 |
49,436
|
|
# promoters associated with transcript
|
43,867 |
43,885 |
55,287
|
51,895
|
51,912
|
30,677 |
41,255
|
|
# promoters based on Comparative Genomics
|
16,214 |
15,648 |
16,673
|
18,413
|
19,168
|
17,023 |
8,181
|
|
# PromoterInspector Predictions |
12,419 |
12,419 |
12,419
|
12,379
|
12,419
|
12,419 |
12,419
|
|
# Homology groups |
15,747 |
13,849 |
14,123
|
14,008
|
14,018
|
13,792 |
13,933
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
1,161,966 |
1,161,966 |
1,161,966
|
1,161,966
|
1,161,966
|
1,163,564 |
1,163,484
|
|
# peptides affected by SNPs
|
12,236 |
12,238 |
13,174
|
10,384
|
10,395
|
1,140 |
1,725
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
5,829,604
|
5,700,266
|
4,936,398 |
4,785,195
|
|
# Module matches in promoters |
1,356,437 |
1,266,522 |
1,450,871
|
1,354,961
|
1,342,489
|
476,907 |
421,657
|
|
# SMARs |
538,710 |
538,710 |
538,710
|
538,710
|
538,710
|
538,710 |
538,710
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# L1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
777 |
777 |
777
|
551
|
551
|
551 |
150
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
258,478 |
258,404 |
254,516
|
197,008
|
196,725
|
132,743 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |