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ElDorado Statistics for Equus caballus Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

EquCab 3.0
EquCab 3.0
EquCab 3.0
EquCab 3.0
NCBI build 2
NCBI build 2
NCBI build 2

# Contigs

4,701
4,701
4,701
4,701
33
33
33

# Basepairs

2,506,966,135
2,506,966,135
2,506,966,135
2,506,966,135
2,367,070,107
2,367,070,107
2,367,070,107

# Gene Loci

22,224
22,224
29,474
34,810
28,660
25,203
24,853

# Primary Transcripts

108,771
108,771
122,425
106,693
68,544
44,385
65,483
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
48,492
48,210
52,697
42,012
16,536
8,395
8,724
# bronze
60,279
60,561
69,728
64,681
52,008
35,990
56,759

# Promoter Regions

88,835
88,082
94,454
99,493
83,183
69,133
70,278
# promoters associated with transcript
48,479
48,479
53,796
57,816
42,492
32,813
55,383
# promoters based on Comparative Genomics
40,356
39,603
40,658
41,677
40,691
36,320
14,895

# PromoterInspector Predictions

23,185
23,185
23,185
23,185
16,542
16,542
16,542

# Homology groups

17,614
16,537
17,209
17,094
15,953
16,101
15,907

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

19,945,430
19,945,430
20,025,191
20,025,191
4,998,808
1,131,800
1,132,761
# peptides affected by SNPs
646,935
646,935
459,023
333,220
73,239
1,777
3,593
# TF sites affected by SNPs
not available
not available
not available
93,545,873
21,847,662
4,421,571
4,262,285

# Module matches in promoters

2,427,549
2,264,473
2,330,732
2,247,336
1,531,667
678,088
607,273

# SMARs

270,444
270,444
270,444
270,444
255,643
255,643
255,643

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

692
690
690
687
744
367
346
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
363,292
363,693
330,630
249,981
148,160
125,034
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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