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ElDorado Statistics for Apis mellifera Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

Amel HAv3.1
Amel HAv3.1
Amel HAv3.1
Amel HAv3.1
NCBI build 5
NCBI build 5
NCBI build 4

# Contigs

177
177
177
177
5,321
5,321
17

# Basepairs

225,250,884
225,250,884
225,250,884
225,250,884
250,287,000
250,287,000
217,211,219

# Gene Loci

9,726
9,726
11,631
11,630
12,811
10,747
6,759

# Primary Transcripts

24,407
24,407
27,846
27,845
28,113
11,678
7,338
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
24,407
24,407
27,846
27,845
28,113
11,678
7,338

# Promoter Regions

14,236
14,211
16,183
16,176
20,040
14,009
8,889
# promoters associated with transcript
14,153
14,153
16,128
16,125
17,365
11,249
7,188
# promoters based on Comparative Genomics
83
58
55
51
2,675
2,760
1,701

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

2,194
1,415
1,409
1,310
6,209
6,334
4,915

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

3,940,251
3,940,251
3,940,251
3,940,251
4,193,725
1,095,581
1,020,026
# peptides affected by SNPs
113,269
113,269
104,061
104,063
79,217
5,027
1,108
# TF sites affected by SNPs
not available
not available
not available
4,814,130
5,169,549
1,128,888
1,022,597

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

220
220
220
220
243
222
160
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
76,693
77,272
68,523
68,520
53,485
25,376
not available

Matrix-Library

Version 11.4
(92 insect matrices)
Version 11.3
(92 insect matrices)
Version 11.2
(92 insect matrices)
Version 11.1
(92 insect matrices)
Version 11.0
(92 insect matrices)
Version 9.1
(91 insect matrices)
Version 8.4
(91 insect matrices)

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