|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
Dmel R6 |
Dmel R6 |
Dmel R6
|
Dmel R6
|
Dmel R6
|
NCBI build 5.41 |
NCBI build 5
|
|
# Contigs |
1,870 |
1,870 |
1,870
|
1,870
|
1,870
|
8 |
7 |
|
# Basepairs |
143,726,002 |
143,726,002 |
143,726,002
|
143,726,002
|
143,726,002
|
130,450,100 |
120,401,063
|
|
# Gene Loci |
16,566 |
16,557 |
16,496
|
16,468
|
16,415
|
14,691 |
13,822
|
|
# Primary Transcripts |
34,902 |
34,947 |
34,665
|
34,525
|
34,600
|
30,873 |
24,047
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
34,902 |
34,947 |
34,665
|
34,525
|
34,600
|
30,873 |
24,047
|
|
# Promoter Regions |
21,377 |
21,382 |
21,192
|
21,171
|
21,311
|
19,229 |
17,483
|
|
# promoters associated with transcript
|
21,104 |
21,106 |
20,918
|
20,878
|
20,852
|
18,792 |
17,061
|
|
# promoters based on Comparative Genomics
|
273 |
276 |
274
|
293
|
459
|
437 |
422
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
5,178 |
5,095 |
5,050
|
5,059
|
5,045
|
5,478 |
5,373
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
5,310,758 |
5,310,758 |
5,310,758
|
5,261,353
|
5,261,353
|
5,188,464 |
11
|
|
# peptides affected by SNPs
|
1,050,810 |
1,047,960 |
1,043,407
|
1,040,826
|
1,038,784
|
851,506 |
4
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
5,432,149
|
5,432,149
|
4,205,140 |
6
|
|
# Module matches in promoters |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SMARs |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
262 |
262 |
262
|
258
|
258
|
238 |
238
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
74,230 |
75,349 |
74,274
|
74,040
|
73,613
|
79,048 |
not available
|
|
Matrix-Library |
Version 11.4 (92 insect matrices) |
Version 11.3 (92 insect matrices) |
Version 11.2 (92 insect matrices) |
Version 11.1 (92 insect matrices) |
Version 11.0 (92 insect matrices) |
Version 9.1 (91 insect matrices) |
Version 8.4 (91 insect matrices) |
|
© 2022 Precigen Bioinformatics Germany GmbH |