|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
ROS Cfam 1.0 |
NCBI build 3 |
NCBI build 3
|
NCBI build 3
|
NCBI build 3
|
NCBI build 3 |
NCBI build 2
|
|
# Contigs |
376 |
3,268 |
3,268
|
3,268
|
3,268
|
3,268 |
40
|
|
# Basepairs |
2,396,858,295 |
2,410,976,875 |
2,410,976,875
|
2,410,976,875
|
2,410,976,875
|
2,410,976,875 |
2,445,126,910
|
|
# Gene Loci |
22,161 |
21,787 |
32,254
|
32,569
|
26,189
|
22,047 |
22,071
|
|
# Primary Transcripts |
115,823 |
106,942 |
126,349
|
107,691
|
80,324
|
46,582 |
79,450
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
57,978 |
45,581 |
50,289
|
42,914
|
34,234
|
16,740 |
20,103
|
|
# bronze
|
57,845 |
61,361 |
76,060
|
64,777
|
46,090
|
29,842 |
59,347
|
|
# Promoter Regions |
85,682 |
81,186 |
91,618
|
91,542
|
82,542
|
67,292 |
71,084
|
|
# promoters associated with transcript
|
51,342 |
47,506 |
56,873
|
54,906
|
45,195
|
33,064 |
56,891
|
|
# promoters based on Comparative Genomics
|
34,340 |
33,680 |
34,745
|
36,636
|
37,347
|
34,228 |
14,193
|
|
# PromoterInspector Predictions |
33,250 |
29,743 |
29,743
|
29,743
|
29,743
|
29,743 |
28,217
|
|
# Homology groups |
17,413 |
16,839 |
17,056
|
17,409
|
17,373
|
17,370 |
17,290
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
4,671,932 |
4,702,450 |
5,091,832
|
4,711,710
|
4,711,650
|
2,793,265 |
2,839,997
|
|
# peptides affected by SNPs
|
244,996 |
224,985 |
233,835
|
162,937
|
138,896
|
5,828 |
10,403
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
21,230,217
|
20,652,434
|
11,095,588 |
10,849,140
|
|
# Module matches in promoters |
3,062,449 |
2,093,146 |
2,249,802
|
2,110,763
|
1,889,748
|
870,226 |
721,838
|
|
# SMARs |
311,481 |
308,380 |
308,380
|
308,380
|
308,380
|
308,380 |
304,961
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# L1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
533 |
546 |
546
|
546
|
546
|
357 |
332
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
334,587 |
316,314 |
310,056
|
236,832
|
199,842
|
141,934 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
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