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ElDorado Statistics for Bos taurus Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

ARS-UCD 1.2
ARS-UCD 1.2
ARS-UCD 1.2
ARS-UCD 1.2
Bos taurus UMD 3.1.1
NCBI build 6
NCBI build 5

# Contigs

2,211
2,211
2,211
2,211
3,144
3,317
11,894

# Basepairs

2,715,853,792
2,715,853,792
2,715,853,792
2,715,853,792
2,670,139,648
2,670,422,299
2,918,090,798

# Gene Loci

23,169
23,168
29,759
29,130
27,214
27,590
23,420

# Primary Transcripts

96,972
97,063
106,604
90,186
93,829
68,805
73,968
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
40,288
39,936
41,766
36,087
30,134
22,678
14,643
# bronze
56,684
57,127
64,838
54,099
63,695
46,127
59,325

# Promoter Regions

81,053
80,474
86,857
85,476
80,095
76,894
67,906
# promoters associated with transcript
44,291
44,304
49,531
45,711
40,968
42,177
52,780
# promoters based on Comparative Genomics
36,762
36,170
37,326
39,765
39,127
34,717
15,126

# PromoterInspector Predictions

20,675
20,675
20,675
20,675
18,682
18,722
19,207

# Homology groups

18,093
17,843
18,643
18,718
17,891
17,997
17,436

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

89,379,082
89,379,082
83,978,415
83,978,415
85,331,503
19,483,059
8,188,964
# peptides affected by SNPs
14,003,881
14,009,841
13,040,904
10,766,503
10,633,304
230,016
75,940
# TF sites affected by SNPs
not available
not available
not available
393,603,336
390,196,143
75,426,909
30,548,732

# Module matches in promoters

2,188,129
2,050,986
2,116,305
1,950,928
1,706,611
916,978
672,081

# SMARs

272,274
272,274
272,274
272,274
269,225
269,235
278,020

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

1,057
1,057
1,057
805
876
867
653
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
290,769
290,258
279,802
222,884
213,213
199,492
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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