|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
| Genome Version |
Zm-B73-REFERENCE-NAM-5.0 |
Zm-B73-REFERENCE-NAM-5.0 |
B73 RefGen v4
|
B73 RefGen v4
|
B73 Ref Gen 3
|
B73 Ref Gen 2 |
B73 Ref Gen 2
|
|
# Contigs |
687 |
687 |
267
|
267
|
12
|
13 |
13
|
|
# Basepairs |
2,182,786,008 |
2,182,786,008 |
2,135,083,061
|
2,135,083,061
|
2,060,653,601
|
2,066,432,718 |
2,066,432,718
|
|
# Gene Loci |
35,143 |
35,143 |
53,524
|
53,511
|
53,501
|
119,525 |
104,585
|
|
# Primary Transcripts |
65,346 |
65,346 |
198,869
|
199,430
|
203,904
|
265,480 |
213,996
|
|
# gold
|
not available
|
not available
|
26,680
|
26,680
|
26,717
|
26,591 |
24,863
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
65,346 |
65,346 |
172,189
|
172,750
|
177,187
|
238,889 |
189,133
|
|
# Promoter Regions |
40,573 |
40,732 |
77,208
|
77,181
|
77,431
|
142,488 |
124,977
|
|
# promoters associated with transcript
|
38,420 |
38,420 |
75,432
|
75,328
|
75,080
|
139,927 |
123,353
|
|
# promoters based on Comparative Genomics
|
2,153 |
2,312 |
1,776
|
1,853
|
2,351
|
2,561 |
1,624
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
13,883 |
13,155 |
14,451
|
14,349
|
13,742
|
13,865 |
14,910
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
22,191 |
21,403
|
|
# SNPs |
not available
|
not available
|
55,598,658
|
46,043,003
|
46,733,628
|
6,787,311 |
4,532
|
|
# peptides affected by SNPs
|
not available
|
not available
|
3,943,895
|
3,850,666
|
3,848,719
|
795,704 |
2,907
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
117,611,463
|
117,745,152
|
9,584,369 |
4,489
|
|
# Module matches in promoters |
62,634 |
62,311 |
121,106
|
128,628
|
191,621
|
125,718 |
112,573
|
|
# SMARs |
101,046 |
101,046 |
99,521
|
99,521
|
96,366
|
96,638 |
96,638
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
169 |
169 |
169
|
167
|
165
|
165 |
165
|
|
Matrix-Library |
Version 11.4 (627 plant matrices) |
Version 11.3 (627 plant matrices) |
Version 11.2 (627 plant matrices) |
Version 11.1 (627 plant matrices) |
Version 11.0 (621 plant matrices) |
Version 9.1 (209 plant matrices) |
Version 8.4 (182 plant matrices) |
|
Module-Library |
Version 6.6 (111 plant modules) |
Version 6.5 (111 plant modules) |
Version 6.4 (111 plant modules) |
Version 6.3 (111 plant modules) |
Version 6.2 (111 plant modules) |
Version 5.7 (97 plant modules) |
Version 5.5 (86 plant modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |