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ElDorado Statistics for Zea mays Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011
Genome Version
Zm-B73-REFERENCE-NAM-5.0
Zm-B73-REFERENCE-NAM-5.0
B73 RefGen v4
B73 RefGen v4
B73 Ref Gen 3
B73 Ref Gen 2
B73 Ref Gen 2

# Contigs

687
687
267
267
12
13
13

# Basepairs

2,182,786,008
2,182,786,008
2,135,083,061
2,135,083,061
2,060,653,601
2,066,432,718
2,066,432,718

# Gene Loci

35,143
35,143
53,524
53,511
53,501
119,525
104,585

# Primary Transcripts

65,346
65,346
198,869
199,430
203,904
265,480
213,996
# gold
not available
not available
26,680
26,680
26,717
26,591
24,863
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
65,346
65,346
172,189
172,750
177,187
238,889
189,133

# Promoter Regions

40,573
40,732
77,208
77,181
77,431
142,488
124,977
# promoters associated with transcript
38,420
38,420
75,432
75,328
75,080
139,927
123,353
# promoters based on Comparative Genomics
2,153
2,312
1,776
1,853
2,351
2,561
1,624

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

13,883
13,155
14,451
14,349
13,742
13,865
14,910

# TSR

not available
not available
not available
not available
not available
22,191
21,403

# SNPs

not available
not available
55,598,658
46,043,003
46,733,628
6,787,311
4,532
# peptides affected by SNPs
not available
not available
3,943,895
3,850,666
3,848,719
795,704
2,907
# TF sites affected by SNPs
not available
not available
not available
117,611,463
117,745,152
9,584,369
4,489

# Module matches in promoters

62,634
62,311
121,106
128,628
191,621
125,718
112,573

# SMARs

101,046
101,046
99,521
99,521
96,366
96,638
96,638

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

169
169
169
167
165
165
165

Matrix-Library

Version 11.4
(627 plant matrices)
Version 11.3
(627 plant matrices)
Version 11.2
(627 plant matrices)
Version 11.1
(627 plant matrices)
Version 11.0
(621 plant matrices)
Version 9.1
(209 plant matrices)
Version 8.4
(182 plant matrices)

Module-Library

Version 6.6
(111 plant modules)
Version 6.5
(111 plant modules)
Version 6.4
(111 plant modules)
Version 6.3
(111 plant modules)
Version 6.2
(111 plant modules)
Version 5.7
(97 plant modules)
Version 5.5
(86 plant modules)

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