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ElDorado Statistics for Pan troglodytes Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

Clint PTRv2
Clint PTRv2
Clint PTRv2
Clint PTRv2
Pan tro 3.0
NCBI build 3
NCBI build 2

# Contigs

4,346
4,346
4,346
4,346
44,449
24,129
26

# Basepairs

3,050,398,082
3,050,398,082
3,050,398,082
3,050,398,082
3,231,170,666
3,323,267,922
3,175,598,723

# Gene Loci

24,671
24,671
34,891
34,887
32,213
25,673
28,111

# Primary Transcripts

125,952
125,952
140,132
140,132
122,425
55,998
116,180
# gold
2,090
2,090
2,090
2,090
2,108
1,874
not available
# silver
48,258
47,568
49,453
52,151
48,901
18,187
27,227
# bronze
75,604
76,294
88,589
85,891
71,416
35,937
88,953

# Promoter Regions

105,920
104,754
115,476
116,055
108,379
84,649
91,125
# promoters associated with transcript
53,545
53,545
62,614
62,505
53,169
35,030
77,066
# promoters based on Comparative Genomics
52,375
51,209
52,862
53,550
55,210
49,619
14,059

# PromoterInspector Predictions

23,055
23,055
23,055
23,055
24,469
19,531
17,990

# Homology groups

19,218
18,638
21,497
20,554
19,556
19,699
19,532

# TSR

not available
not available
not available
not available
not available
1,733
not available

# TSS

not available
not available
not available
not available
not available
1,896
not available

# SNPs

921,940
921,940
1,588,415
1,588,415
1,600,567
1,514,399
1,469,284
# peptides affected by SNPs
21,616
21,616
30,525
30,527
25,106
8,752
15,477
# TF sites affected by SNPs
not available
not available
not available
7,452,168
7,336,762
6,033,547
5,654,510

# Module matches in promoters

2,587,732
2,385,501
2,499,697
2,423,050
2,257,183
933,441
853,423

# SMARs

355,277
355,277
355,277
355,277
375,410
360,711
345,694

# Repeats

2,473,269
2,493,473
2,492,798
1,487,564
1,565,370
1,486,894
1,423,349
# ALU
1,412,649
1,432,853
1,432,853
1,053,688
1,093,447
1,044,181
1,000,024
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
988,993
988,993
988,993
369,590
403,870
377,506
360,475
# THE
71,627
71,627
70,952
64,286
68,053
65,207
62,850

# microRNAs

1,139
1,139
1,139
1,106
1,097
1,077
609
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
394,613
394,255
358,844
358,844
310,097
183,704
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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