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ElDorado Statistics for Gallus gallus Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

bGalGal1.mat.broiler.GRCg7b
GRCg6a
GRCg6a
GRCg6a
Gallus gallus 5.0
NCBI build 3
NCBI build 2

# Contigs

214
464
464
464
23,475
15,932
32

# Basepairs

1,053,332,251
1,065,365,425
1,065,365,425
1,065,365,425
1,230,258,557
1,046,932,099
1,031,900,246

# Gene Loci

17,691
17,489
22,518
22,448
24,881
20,723
16,595

# Primary Transcripts

87,289
77,096
85,647
85,263
85,427
49,692
41,524
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
49,346
42,513
44,826
44,486
43,170
19,922
12,489
# bronze
37,943
34,583
40,821
40,777
42,257
29,770
29,035

# Promoter Regions

52,458
50,460
56,199
57,119
59,554
44,604
39,603
# promoters associated with transcript
39,479
37,886
41,507
42,623
44,523
30,392
32,058
# promoters based on Comparative Genomics
12,979
12,574
14,692
14,496
15,031
14,212
7,545

# PromoterInspector Predictions

21,965
22,911
22,911
22,898
31,219
16,641
13,582

# Homology groups

13,962
13,151
13,303
13,367
13,843
13,226
12,045

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

20,782,002
20,954,342
20,954,976
20,954,976
20,894,338
8,815,688
2,699,847
# peptides affected by SNPs
1,436,605
1,235,913
1,183,856
1,127,284
1,056,697
114,054
13,563
# TF sites affected by SNPs
not available
not available
not available
94,506,724
91,786,400
31,938,429
9,498,439

# Module matches in promoters

1,472,990
1,335,244
1,389,918
1,308,970
1,322,615
477,591
334,602

# SMARs

53,905
54,122
54,122
54,122
61,270
53,115
52,426

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

761
979
979
858
834
851
496
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
275,642
237,333
221,957
213,082
202,611
138,980
not available

Matrix-Library

Version 11.4
(1,307 vertebrate matrices)
Version 11.3
(1,266 vertebrate matrices)
Version 11.2
(1,227 vertebrate matrices)
Version 11.1
(1,157 vertebrate matrices)
Version 11.0
(1,121 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.6
(1,043 vertebrate modules)
Version 6.5
(997 vertebrate modules)
Version 6.4
(960 vertebrate modules)
Version 6.3
(918 vertebrate modules)
Version 6.2
(906 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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