|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
bGalGal1.mat.broiler.GRCg7b |
GRCg6a |
GRCg6a
|
GRCg6a
|
Gallus gallus 5.0
|
NCBI build 3 |
NCBI build 2
|
|
# Contigs |
214 |
464 |
464
|
464
|
23,475
|
15,932 |
32
|
|
# Basepairs |
1,053,332,251 |
1,065,365,425 |
1,065,365,425
|
1,065,365,425
|
1,230,258,557
|
1,046,932,099 |
1,031,900,246
|
|
# Gene Loci |
17,691 |
17,489 |
22,518
|
22,448
|
24,881
|
20,723 |
16,595
|
|
# Primary Transcripts |
87,289 |
77,096 |
85,647
|
85,263
|
85,427
|
49,692 |
41,524
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
49,346 |
42,513 |
44,826
|
44,486
|
43,170
|
19,922 |
12,489
|
|
# bronze
|
37,943 |
34,583 |
40,821
|
40,777
|
42,257
|
29,770 |
29,035
|
|
# Promoter Regions |
52,458 |
50,460 |
56,199
|
57,119
|
59,554
|
44,604 |
39,603
|
|
# promoters associated with transcript
|
39,479 |
37,886 |
41,507
|
42,623
|
44,523
|
30,392 |
32,058
|
|
# promoters based on Comparative Genomics
|
12,979 |
12,574 |
14,692
|
14,496
|
15,031
|
14,212 |
7,545
|
|
# PromoterInspector Predictions |
21,965 |
22,911 |
22,911
|
22,898
|
31,219
|
16,641 |
13,582
|
|
# Homology groups |
13,962 |
13,151 |
13,303
|
13,367
|
13,843
|
13,226 |
12,045
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
20,782,002 |
20,954,342 |
20,954,976
|
20,954,976
|
20,894,338
|
8,815,688 |
2,699,847
|
|
# peptides affected by SNPs
|
1,436,605 |
1,235,913 |
1,183,856
|
1,127,284
|
1,056,697
|
114,054 |
13,563
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
94,506,724
|
91,786,400
|
31,938,429 |
9,498,439
|
|
# Module matches in promoters |
1,472,990 |
1,335,244 |
1,389,918
|
1,308,970
|
1,322,615
|
477,591 |
334,602
|
|
# SMARs |
53,905 |
54,122 |
54,122
|
54,122
|
61,270
|
53,115 |
52,426
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# L1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
761 |
979 |
979
|
858
|
834
|
851 |
496
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
275,642 |
237,333 |
221,957
|
213,082
|
202,611
|
138,980 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |