|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
WBcel235 |
WBcel235 |
WS244
|
WS244
|
WS244
|
WS220 |
NCBI WS160
|
|
# Contigs |
7 |
7 |
7
|
7
|
7
|
7 |
7
|
|
# Basepairs |
100,286,401 |
100,286,401 |
100,286,401
|
100,286,401
|
100,286,401
|
100,286,070 |
100,281,235
|
|
# Gene Loci |
20,578 |
20,578 |
41,522
|
41,802
|
41,822
|
41,650 |
21,732
|
|
# Primary Transcripts |
48,949 |
48,949 |
68,579
|
80,665
|
78,532
|
73,474 |
36,318
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
48,949 |
48,949 |
68,579
|
80,665
|
78,532
|
73,474 |
36,318
|
|
# Promoter Regions |
30,431 |
30,431 |
48,632
|
49,455
|
48,908
|
47,136 |
25,568
|
|
# promoters associated with transcript
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# promoters based on Comparative Genomics
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# TSS |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
171,760 |
171,760 |
171,760
|
171,760
|
171,760
|
171,733 |
1,058
|
|
# peptides affected by SNPs
|
56,145 |
56,145 |
56,519
|
55,464
|
53,686
|
14,559 |
112
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
932,737
|
916,306
|
804,798 |
5,127
|
|
# Module matches in promoters |
425,414 |
405,443 |
634,221
|
687,716
|
661,514
|
316,384 |
173,604
|
|
# SMARs |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# ALU
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# B1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# L1
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# THE
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
257 |
257 |
257
|
254
|
254
|
227 |
209
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
83,552 |
84,266 |
68,614
|
93,075
|
86,025
|
84,776 |
not available
|
|
Matrix-Library |
Version 11.4 (1,307 vertebrate matrices) |
Version 11.3 (1,266 vertebrate matrices) | Version 11.2 (1,227 vertebrate matrices) |
Version 11.1 (1,157 vertebrate matrices) |
Version 11.0 (1,121 vertebrate matrices) |
Version 9.1 (932 vertebrate matrices) |
Version 8.4 (867 vertebrate matrices) |
|
Module-Library |
Version 6.6 (1,043 vertebrate modules) |
Version 6.5 (997 vertebrate modules) |
Version 6.4 (960 vertebrate modules) |
Version 6.3 (918 vertebrate modules) |
Version 6.2 (906 vertebrate modules) |
Version 5.7 (817 vertebrate modules) |
Version 5.5 (737 vertebrate modules) |
|
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