|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
| Genome Version |
TAIR 10.1 |
TAIR 10.1 |
TAIR 10.1
|
TAIR 10.1
|
TAIR 10
|
TAIR 10 |
TAIR 10
|
|
# Contigs |
7 |
7 |
7
|
7
|
7
|
7 |
7
|
|
# Basepairs |
119,668,634 |
119,668,634 |
119,668,634
|
119,668,634
|
119,667,750
|
119,667,750 |
119,667,750
|
|
# Gene Loci |
27,772 |
27,772 |
31,469
|
31,469
|
31,444
|
27,307 |
27,936
|
|
# Primary Transcripts |
56,677 |
56,677 |
61,482
|
61,483
|
61,450
|
43,065 |
43,221
|
|
# gold
|
7,516 |
7,516 |
7,516
|
7,516
|
7,514
|
7,504 |
7,488
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
49,161 |
49,161 |
53,966
|
53,967
|
53,936
|
35,561 |
35,733
|
|
# Promoter Regions |
33,667 |
33,710 |
37,276
|
37,333
|
37,755
|
32,071 |
32,854
|
|
# promoters associated with transcript
|
32,873 |
32,873 |
35,632
|
35,620
|
35,661
|
29,355 |
30,752
|
|
# promoters based on Comparative Genomics
|
794 |
837 |
1,644
|
1,713
|
2,094
|
2,716 |
2,102
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
10,413 |
9,944 |
9,924
|
9,488
|
10,086
|
10,605 |
10,665
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
7,134 |
7,124
|
|
# SNPs |
23,402,236 |
23,402,236 |
not available
|
11,590,428
|
11,590,482
|
1,067,425 |
168
|
|
# peptides affected by SNPs
|
4,411,555 |
4,411,555 |
not available
|
2,313,681
|
2,313,691
|
139,196 |
20
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
37,361,853
|
36,949,663
|
1,582,019 |
216
|
|
# Module matches in promoters |
47,767 |
47,705 |
52,569
|
59,517
|
114,017
|
38,420 |
37,937
|
|
# SMARs |
22,891 |
22,891 |
22,891
|
22,891
|
22,891
|
22,891 |
22,891
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
364 |
364 |
364
|
363
|
363
|
306 |
238
|
|
Matrix-Library |
Version 11.4 (627 plant matrices) |
Version 11.3 (627 plant matrices) |
Version 11.2 (627 plant matrices) |
Version 11.1 (627 plant matrices) |
Version 11.0 (621 plant matrices) |
Version 9.1 (209 plant matrices) |
Version 8.4 (182 plant matrices) |
|
Module-Library |
Version 6.6 (111 plant modules) |
Version 6.5 (111 plant modules) |
Version 6.4 (111 plant modules) |
Version 6.3 (111 plant modules) |
Version 6.2 (111 plant modules) |
Version 5.7 (97 plant modules) |
Version 5.5 (86 plant modules) |
|
© 2022 Precigen Bioinformatics Germany GmbH |