|
|
|
| ElDorado 03-2022 | ElDorado 04-2021 | ElDorado 04-2020 | ElDorado 04-2019 | ElDorado 12-2017 | ElDorado 12-2013 | ElDorado 08-2011 | |
|---|---|---|---|---|---|---|---|
|
Genome Version |
AgamP4 |
AgamP4 |
AgamP4
|
AgamP4
|
AgamP4
|
AgamP3 |
NCBI build 2.2
|
|
# Contigs |
8 |
8 |
8
|
8
|
8
|
8 |
6 |
|
# Basepairs |
273,109,044 |
273,109,044 |
273,109,044
|
273,109,044
|
273,109,044
|
273,109,044 |
230,482,020
|
|
# Gene Loci |
13,306 |
13,306 |
13,306
|
13,306
|
13,357
|
13,193 |
11,987
|
|
# Primary Transcripts |
32,615 |
32,615 |
32,615
|
32,615
|
32,442
|
32,202 |
12,999
|
|
# gold
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# silver
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# bronze
|
32,615 |
32,615 |
32,615
|
32,615
|
32,442
|
32,202 |
12,999
|
|
# Promoter Regions |
15,123 |
15,116 |
14,853
|
14,856
|
15,176
|
14,407 |
12,604
|
|
# promoters associated with transcript
|
15,085 |
15,085 |
14,820
|
14,821
|
14,949
|
14,193 |
12,418
|
|
# promoters based on Comparative Genomics
|
38 |
31 |
33
|
35
|
227
|
214 |
186
|
|
# PromoterInspector Predictions |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Homology groups |
5,302 |
5,064 |
5,022
|
5,077
|
5,110
|
5,529 |
5,396
|
|
# TSR |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SNPs |
1,154,794 |
1,154,794 |
1,982,261
|
1,982,261
|
1,982,261
|
1,137,169 |
1,016,952
|
|
# peptides affected by SNPs
|
95,707 |
95,707 |
95,158
|
95,158
|
95,330
|
55,835 |
4,569
|
|
# TF sites affected by SNPs
|
not available
|
not available
|
not available
|
772,305
|
772,305
|
650,154 |
581,458
|
|
# Module matches in promoters |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# SMARs |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# Repeats |
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
not available
|
|
# microRNAs |
153 |
153 |
153
|
68
|
68
|
71 |
69
|
|
# Pfam families (protein families, domains, motifs and repeats from the Pfam database) |
53,907 |
54,113 |
54,188
|
54,188
|
53,684
|
59,167 |
not available
|
|
Matrix-Library |
Version 11.4 (92 insect matrices) |
Version 11.3 (92 insect matrices) |
Version 11.2 (92 insect matrices) |
Version 11.1 (92 insect matrices) |
Version 11.0 (92 insect matrices) |
Version 9.1 (91 insect matrices) |
Version 8.4 (91 insect matrices) |
|
© 2022 Precigen Bioinformatics Germany GmbH |