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ElDorado Statistics for Anopheles gambiae Genome

ElDorado 03-2022 ElDorado 04-2021 ElDorado 04-2020 ElDorado 04-2019 ElDorado 12-2017 ElDorado 12-2013 ElDorado 08-2011

Genome Version

AgamP4
AgamP4
AgamP4
AgamP4
AgamP4
AgamP3
NCBI build 2.2

# Contigs

8
8
8
8
8
8
6

# Basepairs

273,109,044
273,109,044
273,109,044
273,109,044
273,109,044
273,109,044
230,482,020

# Gene Loci

13,306
13,306
13,306
13,306
13,357
13,193
11,987

# Primary Transcripts

32,615
32,615
32,615
32,615
32,442
32,202
12,999
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
32,615
32,615
32,615
32,615
32,442
32,202
12,999

# Promoter Regions

15,123
15,116
14,853
14,856
15,176
14,407
12,604
# promoters associated with transcript
15,085
15,085
14,820
14,821
14,949
14,193
12,418
# promoters based on Comparative Genomics
38
31
33
35
227
214
186

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

5,302
5,064
5,022
5,077
5,110
5,529
5,396

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

1,154,794
1,154,794
1,982,261
1,982,261
1,982,261
1,137,169
1,016,952
# peptides affected by SNPs
95,707
95,707
95,158
95,158
95,330
55,835
4,569
# TF sites affected by SNPs
not available
not available
not available
772,305
772,305
650,154
581,458

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

153
153
153
68
68
71
69
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
53,907
54,113
54,188
54,188
53,684
59,167
not available

Matrix-Library

Version 11.4
(92 insect matrices)
Version 11.3
(92 insect matrices)
Version 11.2
(92 insect matrices)
Version 11.1
(92 insect matrices)
Version 11.0
(92 insect matrices)
Version 9.1
(91 insect matrices)
Version 8.4
(91 insect matrices)

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