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Matrix Family Library Version 9.4

[New weight matrices] [Matrices modified] [Matrices moved to other families]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 9.4 (November 2015) contains 1601 weight matrices in 447 families classified into the following groups:

The vertebrate group represents binding site descriptions of 9309 transcription factors: The plant group represents binding site descriptions of 965 transcription factors from several plant species.

The fungi group represents binding site descriptions of 141 transcription factors from Saccharomyces cerevisiae and Schizosaccharomyces pombe.


New weight matrices

Vertebrates

Family Family Information Matrix Name Matrix Information
V$AP1F AP1, Activating protein 1 V$BATF.01 Basic leucine zipper transcription factor, ATF-like
V$AP1R MAF and AP1 related factors V$BACH1.02 BTB and CNC homology 1, basic leucine zipper transcription factor 1
V$BACH2.02 BTB and CNC homology 1, basic leucine zipper transcription factor 2
V$AP4R AP4 and related proteins V$AP4.03 Activating enhancer binding protein 4
V$CAAT CCAAT binding factors V$NFYA.01 Nuclear transcription factor Y, alpha (HAP2, NF-YA)
V$CREB cAMP-responsive element binding proteins V$ATF1.02 Activating transcription factor 1
V$KLFS Krueppel like transcription factors V$BKLF.02 Kruppel-like factor 3 (basic)
V$IKLF.01 Kruppel-like factor 5 (intestinal)
V$NEUR NeuroD, Beta2, HLH domain V$ASCL1.01 Achaete-scute family bHLH transcription factor 1
V$NRSF Neuron-restrictive silencer factor V$NRSF.04 Neuron-restrictive silencer factor
V$XBBF X-box binding factors V$RFX2.02 Regulatory factor X 2
V$ZTRE Zinc transcriptional regulatory element V$ZTRE.01 ZTRE motifs (1 bp spacer), ZNF658 binding site
V$ZTRE.02 ZTRE motifs (2 bp spacer), ZNF658 binding site)
V$ZTRE.03 5' half site of ZTRE motif
V$ZTRE.04 3' half site of ZTRE motif

Plants

Family Family Information Matrix Name Matrix Information
P$NACF Plant specific NAC [NAM (no apical meristem), ATAF172, CUC2 (cup-shaped cotyledons 2)] transcription factors P$ANAC092.02 Arabidopsis NAC domain containing protein 92 (ATNAC6)
P$NST2.01 NAC secondary wall thickening promoting factor 2
P$NTMF NAC factors with transmembrane motif P$NTL6.01 NAC WITH TRANSMEMBRANE MOTIF 1-LIKE 6 (NTL6/NTM1)
P$NTL8.01 NAC WITH TRANSMEMBRANE MOTIF 1-LIKE 8 (NTL8/NTM1-like 8)
P$PNRE Plant nitrate-responsive cis-elements P$NBS.01 NIN-binding nucleotide sequences
P$WBXF W Box family P$ZAP1.02 Zinc-dependent activator protein-1, WRKY 1

Fungi

Family Family Information Matrix Name Matrix Information
F$YZRE Yeast zinc responsive element F$ZAP1.01 Zinc-responsive transcriptional activator Zap1
F$ZAP1.02 Zinc-responsive transcriptional activator Zap1p


Weight matrices modified

The following weight matrices have been replaced by better matrices:

Weight matrices moved to other families