| Family |
Family Information |
Matrix Name |
Matrix Information |
| V$ARID |
AT rich interactive domain factor |
V$JARID2.01 |
Jumonji, AT rich interactive domain 2 (JMJ) |
| V$CAAT |
CCAAT binding factors |
V$NFY.04 |
Nuclear factor Y (Y-box binding factor |
| V$GLIF |
GLI zinc finger family |
V$GLI3.02 |
GLI-Kruppel family member GLI3 |
| V$GREF |
Glucocorticoid responsive and related elements |
V$ARE.03 |
Androgene receptor binding site, IR3 sites |
| V$GRHL |
Grainyhead-like transcription factors |
V$GRHL1.01 |
Grainyhead-like 1 (LBP32, MGR, TFCP2L2) |
| V$GTBX |
GT box |
V$ZEC.01 |
Zinc finger protein ZEC (ZFP628) |
| V$HAND |
Twist subfamily of class B bHLH transcription factors |
V$MESP1_2.01 |
Mesoderm posterior 1 and 2 |
| V$TWIST.01 |
TWIST homolog of drosophila |
| V$HDGF |
Hepatoma-derived growth factor |
V$HDGF.01 |
Hepatoma-derived growth factor |
| V$HNFP |
Histone nuclear factor P |
V$MIZF.01 |
MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein, histone nuclear factor P (HiNF-P) |
| V$HOMF |
Homeodomain transcription factors |
V$TLX1.01 |
T-cell leukemia homeobox 1 |
| V$MEF3 |
MEF3 binding sites |
V$SIX.01 |
Binding sites for Six1, Six4 and Six5 |
| V$NEUR |
NeuroD, Beta2, HLH domain |
V$MASH1.01 |
Mammalian achaete scute homolog 1 (Ascl1) |
| V$NFAT |
Nuclear factor of activated T-cells |
V$NFAT5.02 |
Nuclear factor of activated T-cells 5 |
| V$PAX8 |
PAX-2/5/8 binding sites |
V$PAX2.02 |
Paired box protein 2 |
| V$PCBE |
PREB core-binding element |
V$PREB.01 |
Prolactin regulatory element-binding protein |
| V$PRDM |
PRDI-BF1 and RIZ homologous (PR) domain proteins (PRDM) |
V$PRDM5.01 |
PR domain containing 5 |
| V$SIX3 |
Sine oculis homeobox homolog 3 |
V$SIX3.02 |
SIX3 / SIXdomain (SD) and Homeodomain (HD) transcription factor |
| V$SIX3.03 |
SIX3 / SIXdomain (SD) and Homeodomain (HD) transcription factor |
| V$SORY |
SOX/SRY-sex/testis determinig and related HMG box factors |
V$SOX9.03 |
SRY (sex determining region Y)-box 9 homodimer |
| V$SP1F |
(GC-Box factors SP1/GC |
V$SP1.03 |
Stimulating protein 1, ubiquitous zinc finger transcription factor |
| V$STAT |
Signal transducer and activator of transcription |
V$STAT1.02 |
Signal transducer and activator of transcription 1 |
| V$YY1F |
Y-box binding transcription factors, multifunctional proteins involved in transcriptional and translational regulation, mRNA splicing, DNA replication and repair |
V$REX1.01 |
REX1 transcription factor; zinc finger protein 42 |
| V$YY2.01 |
Transcription factor yin yang 2 |
| V$YY2.02 |
Transcription factor yin yang 2 |
| V$ZBPF |
Zinc binding protein factors |
V$ZNF300.01 |
KRAB-containing zinc finger protein 300 |
| V$ZFTR |
Zinc finger transcriptional repressor |
V$ZNF217.01 |
Zinc finger protein 217 |
| Family |
Family Information |
Matrix Name |
Matrix Information |
| F$ASG1 |
Activator of stress genes |
F$ASG1.01 |
Fungal zinc cluster transcription factor Asg1 |
| F$AZF1 |
Asparagine-rich zinc finger 1 |
F$AZF1.01 |
Glucose-dependent zinc finger transcriptional activator |
| F$BAS1 |
Myb-related transcription factor Bas1 |
F$BAS1.01 |
Transcription factor involved in the expression of genes encoding enzymes acting in histidine, purine, and pyrimidine biosynthetic pathways |
| F$BZIP |
Fungal basic leucine zipper family |
F$CIN5.01 |
bZIP transcriptional factor of the yAP-1 family that mediates pleiotropic drug resistance and salt tolerance |
| F$CST6.01 |
Chromosome stability, bZIP transcription factor of the ATF/CREB family (ACA2) |
| F$HAC1.01 |
bZIP transcription factor (ATF/CREB1 homolog) that regulates the unfolded protein response |
| F$HAC1.02 |
bZIP transcription factor (ATF/CREB1 homolog) that regulates the unfolded protein response |
| F$YAP1.01 |
Yeast activator protein of the basic leucine zipper (bZIP) family |
| F$YAP1.02 |
Yeast activator protein of the basic leucine zipper (bZIP) family |
| F$CDTF |
Calcineurin-dependent transcription factor |
F$CRZ1.01 |
Calcineurin-responsive zinc finger 1 |
| F$CSRE |
Carbon source-responsive elements |
F$CAT8.01 |
Zinc cluster transcriptional activator binding to carbon source responsive elements (CSRE) |
| F$RDS2.01 |
Regulator of drug sensitivity 2, zinc cluster transcriptional activator involved in conferring resistance to ketoconazole |
| F$SIP4.01 |
Zinc cluster transcriptional activator, binds to the carbon source-responsive element (CSRE) of gluconeogenic genes |
| F$DUIS |
DAL upstream induction sequence |
F$DAL82.01 |
Transcriptional activator for allantoin catabolic genes |
| F$FBAS |
Fungi branched amino acid biosynthesis |
F$LEU3.02 |
LEU3, S. cerevisiae, zinc cluster protein |
| F$FKHD |
Fungal fork head transcription factors |
F$FKH1.01 |
Fork head transcription factor Fkh1 |
| F$FKH2.01 |
Fork head transcription factor Fkh2 |
| F$G1TF |
G1 specifc transcription factors |
F$ACE2.01 |
Transcription factor that activates expression of early G1-specific genes |
| F$SWI5.01 |
SWI5, activates transcription of genes expressed at the M/G1 boundary and in G1 phase of the cell cycle |
| F$GATA |
Fungal GATA binding factors |
F$DAL80.01 |
Degradation of allantoin, negative regulator of genes in multiple nitrogen degradation pathways |
| F$GAT1.01 |
GATA-type Zn finger protein Gat1 |
| F$GLN3.01 |
Transcriptional regulator of nitrogen metabolism |
| F$GZF3.01 |
GATA zinc finger protein Gzf3 |
| F$GATC |
GATA-class proteins binding to GATC motifs |
F$GAT3.01 |
(GATA-type Zn finger protein Gat3 |
| F$GAT4.01 |
GATA-type Zn finger protein Gat4 |
| F$SRD1.01 |
Protein involved in the processing of pre-rRNA to mature rRNA |
| F$HAL9 |
Halotolerance 9 |
F$HAL9.01 |
Zinc cluster transcription factor HAL9, involved in salt tolerance |
| F$HOMD |
Homeodomain-containing transcriptional regulators |
F$YOX1.01 |
Yeast homeobox 1, homeodomain-containing transcriptional repressor |
| F$YOX1.02 |
Yeast homeobox 1, homeodomain-containing transcriptional repressor |
| F$ICGG |
Inverted CGG triplets spaced preferentially by 10 bp |
F$CHA4.01 |
Fungal zinc cluster transcription factor Cha4, single triplet |
| F$CHA4.02 |
Fungal zinc cluster transcription factor Cha4, single triplet |
| F$ICGG_N10.01 |
Inverted CGG motifs separated by a spacer of 10 bp; Put3, Tea1 and Cha4 binding sites |
| F$TEA1.01 |
Ty1 enhancer activator, zinc cluster DNA-binding protein |
| F$IRTF |
Iron-responsive transcriptional activators |
F$AFT1.01 |
Transcription factor involved in iron utilization and homeostasis (iron-sensing transcription factor AFT1) |
| F$AFT2.01 |
Activator of Fe (iron) transcription 2, iron-regulated transcriptional activator |
| F$MGCM |
Monomeric Gal4-class motifs |
F$ARO80.01 |
Aromatic amino acid requiring (activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids) |
| F$CEP3.01 |
Essential kinetochore protein, component of the CBF3 complex that binds the CDEIII region of the centromere |
| F$LYS14.01 |
Transcriptional activator involved in regulation of genes of the lysine biosynthesis pathway |
| F$RGT1.01 |
Glucose-responsive transcription factor involved in regulation of glucose transporters |
| F$RGT1.02 |
Glucose-responsive transcription factor involved in regulation of glucose transporters |
| F$YRR1.01 |
Zinc cluster transcription factor, activates genes involved in multidrug resistance (PDR2) |
| F$MOT3 |
Modifier of transcription 3 |
F$MOT3.01 |
Modifier of transcription 3, zinc finger transcription factor involved in repression of a subset of hypoxic genes |
| F$NRGF |
NRG zinc finger factors |
F$NRG1.01 |
Transcriptional repressor Nrg1 |
| F$PACE |
Proteasome-associated control elements |
F$RPN4.01 |
Transcriptional activator of proteasomal genes |
| F$PDRE |
Pleiotropic drug resistance responsive elements |
F$PDR1.01 |
Zinc cluster protein, master regulator involved in recruiting other zinc cluster proteins to pleiotropic drug response elements (PDREs) |
| F$PHD1 |
Pseudoh yphal determinant 1 |
F$PHD1.01 |
Transcription factor involved in regulation of filamentous growth |
| F$PHRR |
pH responsive regulators |
F$RIM101.01 |
Transcriptional repressor involved in response to pH and in cell wall construction |
| F$RDNA |
RDNA binding factor |
F$REB1.02 |
rDNA enhancer binding protein 1, termination factor for RNA polymerase I and transcription factor for RNA polymerase II |
| F$RDR1 |
Repressor of Drug Resistance 1 |
F$RDR1.01 |
Repressor of Drug Resistance 1 (transcriptional repressor involved in the control of multidrug resistance |
| F$RDS1 |
Regulator of Drug Sensitivity 1 |
F$RDS1.01 |
Regulator of Drug Sensitivity 1, zinc cluster transcription factor involved in conferring resistance to cycloheximide |
| F$RFXP |
Regulatory factor X protein, homologous to mammalian RFX1-5 |
F$RFX1.01 |
RFX1 (CRT1) is a DNA-binding protein that acts by recruiting Ssn6 and Tup1, general repressors to the promoters of damage-inducible genes |
| F$RFX1.02 |
RFX1 (CRT1) is a DNA-binding protein that acts by recruiting Ssn6 and Tup1, general repressors to the promoters of damage-inducible genes |
| F$ROX1 |
Repressor of hypoxic genes |
F$ROX1.01 |
Heme-dependent transcriptional repressor of hypoxic genes |
| F$RRPE |
Ribosomal RNA processing element |
F$STB3.01 |
Ribosomal RNA processing element (RRPE)-binding protein |
| F$SKN7 |
Skn7 response regulator of Saccharomyces cerevisiae |
F$SKN7.01 |
SKN7, a transcription factor contributing to the oxidative stress response |
| F$SREB |
Sterol regulatory element binding |
F$ECM22_UPC2.01 |
Sterol regulatory element binding proteins Ecm22 and Upc2 |
| F$STPF |
STP gene family |
F$STP2.01 |
Proteolytically activated transcription factor |
| F$STP4.01 |
Krueppel-type zinc finger protein |
| F$SXBP |
S.cerevisiae, XhoI site-binding protein I |
F$XBP1.02 |
Stress-induced transcriptional repressor |
| F$TALE |
Fungal TALE homeodomain class |
F$CUP9.01 |
Homeodomain transcriptional repressor Cup9 |
| F$TOS8.01 |
Homeodomain-containing transcription factor |
| F$TEAF |
TEA/ATTS DNA binding domain factors |
F$TEC1.01 |
Transposon enhancement control 1, required for full Ty1 epxression, Ty1-mediated gene activation, and haploid invasive and diploid pseudohyphal growth |
| F$TGRF |
Telobox-containing general regulatory factor |
F$TBF1.01 |
TTAGGG repeat binding factor 1 |
| F$TBF1.02 |
TTAGGG repeat binding factor 1 |
| F$TRMM |
Transcriptonal regulator of methionine metabolism |
F$MET31.01 |
Zinc-finger DNA-binding protein, involved in transcriptional regulation of the methionine biosynthetic genes |
| F$MET32.01 |
Zinc-finger DNA-binding protein, involved in transcriptional regulation of the methionine biosynthetic genes |
| F$URS1 |
Sequence element located upstream of early meiosis-specific genes |
F$UME6.01 |
UME6, key regulator of nitrogen repression and meiotic development |
| F$WHBS |
Winged helix binding sites |
F$FHL1.01 |
Fork head transcription factor Fhl1 |
| F$YABF |
Yeast ABF factors |
F$ABF1.03 |
ARS (autonomously replicating sequence)-binding factor I |
| F$ABF1.04 |
ARS (autonomously replicating sequence)-binding factor I |
| F$YGAL |
Yeast GAL4 factor |
F$GAL4.03 |
DNA-binding zinc cluster transcription factor required for activation of GAL genes |
| F$YGCN |
Yeast GCN4 factor |
F$GCN4.03 |
Leucine zipper transcription factor Gcn4 |
| F$YHLH |
Yeast helix-loop-helix |
F$CBF1.02 |
Helix-loop-helix DNA-binding factor Cbf1 (centromere binding factor) |
| F$PHO4.02 |
bHLH transcription factor involved in the transcriptional control of the phosphatase regulon |
| F$RTG3.01 |
bHLH/Zip transcription factor that forms a complex with Rtg1p, to activate the retrograde (RTG) and TOR pathways |
| F$TYE7.01 |
bHLH transcription factor involved in transcriptional activation of glycolytic genes |
| F$YHSF |
Yeast heat shock factors |
F$HSF1.01 |
Trimeric heat shock transcription factor |
| F$HSF1.02 |
Trimeric heat shock transcription factor |
| F$MGA1.01 |
Heat shock transcription factor Mga1 |
| F$YMAT |
Yeast mating factors |
F$HMRA2.01 |
Hidden Mat Right A2, a2 is one of two genes encoded by the a mating type cassette in S. cerevisiae |
| F$MATALPHA2.02 |
Homeodomain transcriptional repressor Matalpha2 |
| F$YMCB |
Yeast Mlu I cell cycle box |
F$MBP1.01 |
Transcription factor binding to the MluI cell cycle box (MCB) |
| F$SWI4.01 |
DNA binding component of the SBF(SCB binding factor) complex (Swi4p-Swi6p) |
| F$YMCM |
Yeast cell cycle and metabolic regulator |
F$MCM1.02 |
Yeast factor MCM1 cooperating with MATalpha factors |
| F$YMIG |
Yeast GC-Box Proteins |
F$MIG1.02 |
MIG1, zinc finger protein mediates glucose repression |
| F$MIG2.01 |
MIG2, zinc finger protein mediates glucose repression |
| F$MIG3.01 |
Zinc finger transcriptional repressor MIG3 |
| F$YMSE |
Yeast middle sporulation elements |
F$MSE.01 |
Middle sporulation element (MSE) |
| F$NDT80.01 |
Meiosis-specific transcription factor, binds to promoters containing middle sporulation elements (MSE) |
| F$SUM1.01 |
Transcriptional repressor required for mitotic repression of middle sporulation-specific genes |
| F$YORE |
Yeast oleate response elements |
F$OAF1.01 |
Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p |
| F$ORE.01 |
Oleate response element, binding motif of Oaf1 homodimers or Oaf1/Pip2 heterodimers |
| F$YRAP |
Yeast activator of glycolyse genes / repressor of mating type l |
F$RAP1.02 |
RAP1 (TUF1), activator or repressor depending on context |
| F$RAP1.03 |
RAP1 (TUF1), activator or repressor depending on context |
| F$YRSC |
Yeast transcription factors remodeling chromatin structure |
F$RSC30.01 |
Component of the RSC chromatin remodeling complex |
| F$RSC3.01 |
Component of the RSC chromatin remodeling complex |
| F$YSTR |
Yeast stress response elements |
F$GIS1.01 |
GIg1-2 suppressor, involved in the expression of genes during nutrient limitation, JmjC domain-containing histone demethylase |
| F$MSN2.01 |
Transcriptional activator for genes in multistress response |
| F$MSN4.01 |
Transcriptional activator related to Msn2p, activated in stress conditions |
| F$RPH1.01 |
Jumonji-like transcription factor |
| F$USV1.01 |
(Usv (Up in StarVation), Nsf1 (nutrient and stress factor 1) |
