| Family |
Family Information |
Matrix Name |
Matrix Information |
| V$ABDB |
Abdominal-B type homeodomain transcription factors |
V$HOXA9.02 |
Homeobox A9 / Hox1-gamma |
| V$HOXA10.01 |
Homeobox A10 / Hox1.8 |
| V$HOXA11.01 |
Homeobox A11 |
| V$HOXA13.01 |
Homeobox A13 |
| V$HOXB9.02 |
Homeobox B9 |
| V$HOXB13.01 |
Homeobox B13 |
| V$HOXC9.01 |
Homeobox C9 / Hox-3beta |
| V$HOXC10.01 |
Homeobox C10/ Hox-3iota |
| V$HOXC11.01 |
Homeobox C11/ Hox-3H |
| V$HOXC12.01 |
Homeobox C12/ Hox-3phi |
| V$HOXC13.02 |
Homeobox C13 / Hox-3gamma |
| V$HOXD10.01 |
Homeobox D10 |
| V$HOXD11.01 |
Homeobox D11 / Hox-4phi |
| V$HOXD12.01 |
Homeobox D12 / Hox-4H |
| V$HOXD13.01 |
Homeobox D13 / Hox-4I |
| V$BCDF |
Bicoid-like homeodomain transcription factors |
V$CRX.02 |
Cone-rod homeobox-containing transcription factor |
| V$DMBX1.01 |
Diencephalon/mesencephalon homeobox 1 |
| V$GSC.02 |
Vertebrate bicoid-type homeodomain protein Goosecoid |
| V$OBOX1.01 |
Oocyte specific homeobox 1 |
| V$OBOX2.01 |
Oocyte specific homeobox 2 |
| V$OBOX3.01 |
Oocyte specific homeobox 3 |
| V$OBOX5.01 |
Oocyte specific homeobox 5 |
| V$OBOX6.01 |
Oocyte specific homeobox 6 |
| V$OTX1.01 |
Orthodenticle homeobox 1 |
| V$OTX2.02 |
Orthodenticle homeobox 2 |
| V$PITX2.01 |
Pituitary homeo box 2, Ptx2, paired-like homeodomain 2 |
| V$PITX3.01 |
Paired-like homeodomain 3, CTPP 4, Ptx3 |
| V$PTX1.02 |
Pituitary homeo box 1 (Pitx1), paired-like homeodomain 1 |
| V$BRN5 |
Brn-5 POU domain factors |
V$BRN5.04 |
POU class 6 homeobox 1 (POU6F1) |
| V$BRNF |
Brn POU domain factors |
V$BRN2.04 |
POU class 3 homeobox 2 (POU3F2), OTF7 |
| V$BRN3.03 |
POU class 4 homeobox 3 (POU4F3), BRN3C |
| V$BRN4.02 |
POU class 3 homeobox 4 (POU3F4) |
| V$TST1.02 |
POU class 3 homeobox 1 (POU3F1), OCT6 |
| V$CART |
Cart-1 (cartilage homeoprotein 1) |
V$ALX3.01 |
Aristaless-like homeobox 3 |
| V$ALX4.01 |
Aristaless-like homeobox 4 |
| V$ARX.01 |
Aristaless related homeobox |
| V$CART1.02 |
Cartilage homeo protein 1 |
| V$ESX1.01 |
ESX homeobox 1 |
| V$ISX.01 |
Intestine-specific homeobox |
| V$OTP.01 |
Orthopedia homeobox |
| V$PHOX2A.01 |
Paired-like homeobox 2a (Arix) |
| V$PHOX2B.01 |
Paired-like homeobox 2b, PMX2 B |
| V$PROP1.01 |
Prophet of Pit 1, PROP paired-like homeobox 1 |
| V$PRRX1.01 |
Paired related homeobox 1, paired mesoderm homeo box 1 (PMX1) |
| V$PRRX2.01 |
Paired related homeobox 2, paired mesoderm homeo box 1 (PMX1), S8 |
| V$RAX.01 |
Retina and anterior neural fold homeobox |
| V$RHOX6.01 |
Reproductive homeobox 6, placenta specific homeobox 1 |
| V$SHOX2.01 |
Short stature homeobox 2 |
| V$UNCX4.01 |
UNC homeobox (UNCX) |
| V$VSX1.01 |
Visual system homeobox 1 |
| V$CDXF |
Vertebrate caudal related homeodomain protein |
V$CDX1.02 |
Caudal type homeo box 1 |
| V$CDX2.02 |
Caudal type homeobox transcription factor 2 |
| V$CLOX |
CLOX and CLOX homology (CDP) factors |
V$CPHX.01 |
Cytoplasmic polyadenylated homeobox |
| V$CP2F |
CP2-erythrocyte Factor related to drosophila Elf1 |
V$TCFCP2L1.01 |
Transcription factor CP2-like 1 (LBP-9) |
| V$CTCF |
CTCF and BORIS gene family, transcriptional regulators with 11 highly conserved zinc finger domains |
V$CTCF.02 |
Insulator protein CTCF (CCCTC-binding factor) |
| V$CTCF.03 |
Insulator protein CTCF (CCCTC-binding factor) |
| V$CTCF.04 |
Insulator protein CTCF (CCCTC-binding factor) |
| V$DLXF |
Distal-less homeodomain transcription factors |
V$DLX1.02 |
Distal-less homeobox 1 |
| V$DLX2.01 |
Distal-less homeobox 2 |
| V$DLX3.03 |
Distal-less homeobox 3 |
| V$DLX4.01 |
Distal-less homeobox 4 |
| V$DLX5.01 |
Distal-less homeobox 5 |
| V$EBOX |
E-box binding factors |
V$CMYC.01 |
Myelocytomatosis oncogene (c-myc proto-oncogene) |
| V$NMYC.02 |
v-myc myelocytomatosis viral related oncogene, neuroblastoma derived |
| V$USF1.01 |
Upstream stimulating factor 1 |
| V$EREF |
Estrogen response elements |
V$ESRRB.01 |
Estrogen-related receptor beta |
| V$FKHD |
Fork head domain factors |
V$HNF3.01 |
Hepatocyte nuclear factor 3 (alpha, beta) (FOXA1, FOXA2) |
| V$HNF3B.02 |
Hepatic nuclear factor 3beta (FOXA2) |
| V$HBOX |
Homeobox transcription factors |
V$EMX2.01 |
Empty spiracles homeobox 2 |
| V$EN1.02 |
Engrailed homeobox 1 |
| V$EN2.01 |
Engrailed homeobox 2 |
| V$EVX1.01 |
Even-skipped homeobox 1 |
| V$EVX2.01 |
Even-skipped homeobox 2 |
| V$GBX1.01 |
Gastrulation brain homeobox 1 |
| V$GBX2.01 |
Gastrulation brain homeobox 2 |
| V$GSH2.02 |
Homeodomain transcription factor Gsh-2 |
| V$HLXB9.01 |
Motor neuron and pancreas homeobox 1 (Mnx1) |
| V$MEOX1.01 |
Mesenchyme homeobox 1 |
| V$VAX1.01 |
Ventral anterior homeobox 1 |
| V$VAX2.01 |
Ventral anterior homeobox 2 |
| V$HNF1 |
Hepatic Nuclear Factor 1 |
V$HMBOX.01 |
Homeobox containing 1 |
| V$HNF1.04 |
Hepatocyte nuclear factor 1 alpha (Tcf-1) |
| V$TCF2.01 |
Hepatocyte nuclear factor 1 beta (HNF1B) |
| V$HOMF |
Homeodomain transcription factors |
V$BARHL1.01 |
BarH-like homeobox 1 |
| V$BARHL2.01 |
BarH-like homeobox 2 |
| V$BARX1.01 |
BARX homeobox 1 |
| V$BARX2.02 |
BARX homeobox 2 |
| V$BSX.01 |
Brain specific homeobox |
| V$HMX1.01 |
H6 family homeobox 1 / NKX5-3 |
| V$HMX2.03 |
Hmx2/Nkx5-2 homeodomain transcription factor |
| V$HMX3.03 |
H6 homeodomain HMX3/Nkx5.1 transcription factor |
| V$LBX2.01 |
Ladybird homeobox 2 |
| V$MSX1.01 |
Muscle-segment homeobox 1, msh homeobox 1 |
| V$MSX2.02 |
Muscle-segment homeobox 2, msh homeobox 2 |
| V$MSX3.01 |
Homeobox, msh-like 3 |
| V$NOBOX.02 |
NOBOX oogenesis homeobox |
| V$TLX2.01 |
T-cell leukemia, homeobox 2 |
| V$HOXF |
Paralog hox genes 1-8 from the four hox clusters A, B, C, D |
V$HOXA1.01 |
Homeobox A1 |
| V$HOXA2.01 |
Homeobox A2 |
| V$HOXA3.01 |
Homeobox A3 |
| V$HOXA4.01 |
Homeobox A4 |
| V$HOXA5.01 |
Homeobox A5 / Hox-1.3 |
| V$HOXA6.01 |
Homeobox A6 / Hox 1beta |
| V$HOXB3.01 |
Homeobox B3 / Hox 2-gamma |
| V$HOXB4.01 |
Homeobox B4 / Hox-2phi |
| V$HOXB5.01 |
Homeobox B5 / Hox-2alpha |
| V$HOXB6.01 |
Homeobox B6 / Hox2-beta |
| V$HOXB7.01 |
Homeobox B7 / Hox2c |
| V$HOXB8.01 |
Homeobox B8 / Hox-2delta |
| V$HOXC4.01 |
Homeobox C4 / Hox-3epsilon |
| V$HOXC5.01 |
Homeobox C5 / Hox-3delta |
| V$HOXC6.01 |
Homeobox C6 / Hox-3C |
| V$HOXC8.01 |
Homeobox C8 / Hox-3alpha |
| V$HOXD1.01 |
Homeobox D1 / Hox-4gamma |
| V$HOXD3.01 |
Homeobox D3 / Hox-4alpha |
| V$HOXD8.01 |
Homeobox D8 |
| V$HZIP |
Homeodomain-leucine zipper transcription factors |
V$HOMEZ.01 |
Homeobox and leucine zipper encoding transcription factor |
| V$IRXF |
Iroquois homeobox transcription factors |
V$IRX2.01 |
Iroquois homeobox 2 |
| V$IRX3.01 |
Iroquois homeobox 3 |
| V$IRX4.01 |
Iroquois homeobox 4 |
| V$IRX5.01 |
Iroquois homeobox 5 |
| V$IRX6.01 |
Iroquois homeobox 6 |
| V$KLFS |
Krueppel like transcription factors |
V$GKLF.03 |
Gut-enriched Krueppel-like factor / KLF4 |
| V$LHXF |
Lim homeodomain factors |
V$ISL2.01 |
ISL LIM homeobox 2 |
| V$LHX1.01 |
LIM homeobox 1 |
| V$LHX2.01 |
LIM homeobox 2 |
| V$LHX3.03 |
LIM homeobox 3 |
| V$LHX4.01 |
LIM homeobox 4, Gsh4 |
| V$LHX5.01 |
LIM homeobox 5 |
| V$LHX6.01 |
LIM homeobox 6 |
| V$LHX8.01 |
LIM homeobox 8 |
| V$LHX9.01 |
LIM homeobox 9 |
| V$LMX1A.01 |
LIM homeobox transcription factor 1, alpha |
| V$LMX1B.02 |
LIM homeobox transcription factor 1, beta |
| V$NKX1 |
NK1 homeobox transcription factors |
V$NKX11.01 |
NK1 homeobox 1, SAX2 |
| V$NKX12.01 |
NK1 homeobox 2, Sax1-like |
| V$NKX6 |
NK6 homeobox transcription factors |
V$NKX61.03 |
NK6 homeobox 1, NKX6 ALPHA |
| V$NKX61.03 |
NK6 homeobox 3 |
| V$NKXH |
NKX homeodomain factors |
V$BAPX1.01 |
Bagpipe homeobox homolog 1 (homeodomain protein Nkx-3.2) |
| V$NKX22.01 |
NK2 homeobox 2, NKX2BETA |
| V$NKX23.01 |
NK2 homeobox 3, CSX 3 |
| V$NKX24.01 |
NK2 homeobox 4, NKX 2 DELTA |
| V$NKX25.04 |
NK2 homeobox 5, cardiac-specific homeo box 1 (Csx1) |
| V$NKX26.01 |
NK2 homeobox 6, Csx2 |
| V$NKX29.01 |
NK2 homeobox 9, NKX2H |
| V$NKX31.02 |
NK3 homeobox 1, NKX-3 ALPHA, BAPX2 |
| V$TTF1.02 |
Thyroid transcription factor-1, NK2 homeobox 1 (Nkx2-1) |
| V$NR2F |
Nuclear receptor subfamily 2 factors |
V$HNF4A.01 |
Hepatic nuclear factor 4alpha, DR1 sites |
| V$NRSF |
Neuron-restrictive silencer factor |
V$NRSF.02 |
Neuron-restrictive silencer factor (11 bp spacer between half sites) |
| V$NRSF.03 |
Neuron-restrictive silencer factor (17 bp spacer between half sites) |
| V$OCT1 |
Octamer binding protein |
V$OCT1.03 |
Octamer-binding transcription factor-1, POU class 2 homeobox 1 (POU2F1) |
| V$OCT2.01 |
Octamer-binding transcription factor-2, POU class 2 homeobox 2 (POU2F2) |
| V$OCT3_4.02 |
POU domain, class 5, transcription factor 1 |
| V$POU2F3.01 |
POU class 2 homeobox 3 (POU2F3) |
| V$POU3F3.01 |
POU class 3 homeobox 3 (POU3F3), OTF8 |
| V$OVOL |
OVO homolog-like transcription factors |
V$OVOL1.01 |
Zinc finger transcription factor OVO homolog-like 1 |
| V$PAXH |
PAX homeodomain binding sites |
V$PAX4.02 |
Paired box 4, homeodomain binding site |
| V$PAX6_HD.01 |
Paired box 6, homeodomain binding site |
| V$PDX1 |
Pancreatic and intestinal homeodomain transcription factor |
V$IPF1.01 |
Insulin promoter factor 1, pancreatic and duodenal homeobox 1 (Pdx1) |
| V$PIT1 |
GHF-1 pituitary specific pou domain transcription factor |
V$PIT1.02 |
POU domain, class 1, transcription factor 1 (POU1F1) / Pituitary transcription factor-1 |
| V$SIXF |
Sine oculis (SIX) homeodomain factors |
V$SIX1.01 |
(Sine oculis homeobox homolog 1 |
| V$SIX2.01 |
Sine oculis homeobox homolog 2 |
| V$SIX4.01 |
Sine oculis homeobox homolog 4 |
| V$SIX6.01 |
Sine oculis homeobox homolog 6, optic homeobox 2 (OPTX2) |
| V$SORY |
SOX/SRY-sex/testis determinig and related HMG box factors |
V$SOX2.01 |
SRY-box containing gene 2 |
| V$STAT |
Signal transducer and activator of transcription |
V$STAT3.02 |
Signal transducer and activator of transcription 3 |
| V$TALE |
TALE homeodomain class recognizing TG motifs |
V$MEIS1.02 |
Meis homeobox 1 |
| V$MRG1.01 |
Meis homeobox 2 (Meis2) |
| V$MRG2.01 |
Meis homeobox 3 (Meis3) |
| V$PKNOX1.01 |
PBX/knotted 1 homeobox 1 |
| V$PKNOX2.01 |
PBX/knotted 1 homeobox 2 |
| V$TGIF1.01 |
TGFB-induced factor homeobox 1, TALE homeobox TG-interacting factor 1 |
| V$TGIF2.01 |
TGFB-induced factor homeobox 2, TALE homeobox TG-interacting factor 2 |
| V$ZFXY |
Zfx and Zfy - transcription factors implicated in mammalian sex determination |
V$ZFX.01 |
X-linked zinc finger protein |
