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Matrix Family Library Version 6.2

[New weight matrices] [Matrices renamed] [Matrices modified]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 6.2 (October 2006) contains 713 weight matrices in 296 families classified into the following groups:

The vertebrate group represents binding site descriptions of 2690 transcription factors: The plant group represents binding site descriptions of 558 transcription factors from several plant species.


New weight matrices

Vertebrates

Family Family Information Matrix Name Matrix Information
V$GLIF GLI zinc=finger family V$GLI1.02 Glioma-associated oncogene homolog 1
V$GLI2.01 GLI-Kruppel family member GLI2
V$GLI3.01 GLI-Kruppel family member GLI3
V$GRHL Grainyhead-like transcription factors V$GRHL3.01 Grainyhead-like 3 (sister-of-mammalian grainyhead - SOM)
V$HOXF Factors with moderate activity to homeo domain consensus sequence V$PCE1.01 Photoreceptor conserved element 1
V$NF1F Nuclear factor 1 V$NF1.03 Non-palindromic nuclear factor I binding sites
V$RXRF RXR heterodimer binding sites V$LXRE.02 Highly conserved DR1 element selected by LXRbeta/RXR heterodimers


Insects

Family Family Information Matrix Name Matrix Information
I$DGLI Drosophila GLI ortholog factors I$CI.01 Drosophila GLI ortholog cubitus interruptus



Weight matrices renamed

The following weight matrices have been renamed because of the previously incorrect naming:

Weight matrices modified

The following weight matrices have been replaced by better matrices: