| Family |
Family Information |
Matrix Name |
Matrix Information |
| P$AREF |
Auxin response element |
P$ARE.01 |
Auxin Response Element |
| P$GCCF |
GCC Box family |
P$GCC-BOX.01 |
GCC-box, ethylene-responsive element (ERE) |
| P$HOCT |
Octamer motif of Histone H3, H4 promoters |
P$HOCT.01 |
Octamer motif found in plant histone H3 and H4 genes |
| P$LEGB |
Legumin Box family |
P$LEGB.01 |
Legumin box, highly conserved sequence element about 100 bp upstream
of the TSS in legumin genes |
| P$PBOX |
Plant P-Box binding sites |
P$PBOX.01 |
Prolamin box, conserved in cereal seed storage protein gene promoter
s |
| P$PGCN |
Plant GCN4 homolog |
P$GCN4.01 |
GCN4, conserved in cereal seed storage protein gene promoters, simil
ar to yeast GCN4 and vertebrate AP-1 |
| P$WBXF |
W Box family |
P$WRKY.01 |
WRKY plant specific zinc-finger-type factor associated with pathogen
defence, W box |
| P$ZAPF |
Zinc-dependent Activator Protein |
P$ZAP1.01 |
Arabidopsis thaliana Zinc-dependent Activator Protein-1 (ZAP1) |
| Family |
Family Information |
Matrix Name |
Matrix Information |
| V$BCL6 |
POZ domain zinc finger expressed in B-Cells |
V$BCL6.01 |
POZ/zinc finger protein, transcriptional repressor, translocations observed
in diffuse large cell lymphoma |
| V$BCL6.02 |
POZ/zinc finger protein, transcriptional repressor, translocations observed
in diffuse large cell lymphoma |
| V$BRNF |
Brn POU domain factors |
V$BRN3.01 |
POU transcription factor Brn-3 |
| V$CABL |
C-abl DNA binding sites |
V$CABL.01 |
Multifunctional c-Abl src type tyrosine kinase |
| V$CART |
Cart-1 (cartilage homeoprotein 1) |
V$XVENT2.01 |
Xenopus homeodomain factor Xvent-2; early BMP signaling response |
| V$EBOX |
E-BOX binding factors |
V$ATF6.01 |
Member of b-zip family, induced by ER damage/stress |
| V$EKLF |
Erythroid krueppel like factor |
V$EKLF.01 |
Erythroid krueppel like factor (EKLF) |
| V$ETSF |
Human and murine ETS1 Factors |
V$FLI.01 |
ETS family member FLI |
| V$HOXF |
Factors with moderate activity to homeodomain consensus sequence |
V$HOXA9.01 |
Member of the vertebrate HOX - cluster of homeobox factors |
| V$LEFF |
LEF1/TCF |
V$LEF1.01 |
TCF/LEF-1, involved in the Wnt signal transduction pathway |
| V$MEIS |
Homeodomain factor aberrantly expressed in myeloid leukemia |
V$MEIS1.01 |
Homeobox protein MEIS1 binding site |
| V$MOKF |
Mouse Krueppel like factor |
V$MOK2.01 |
Ribonucleoprotein associated zinc finger protein MOK-2 |
| V$PDX1 |
Pancreatic and intestinal homeodomain transcr. factor |
V$ISL1.01 |
Pancreatic and intestinal lim-homeodomain factor |
| V$RARF |
Nuclear receptor for retinoic acid |
V$RTR.01 |
Retinoid receptor-related testis-associated receptor (GCNF/RTR) |
| V$RBPF |
RBPJ - kappa |
V$RBPJK.01 |
Mammalian transcriptional repressor RBP-Jkappa/CBF1 |
| V$RXRF |
RXR heterodimer binding sites |
V$FXRE.01 |
Farnesoid X - activated receptor (RXR/FXR dimer) |
| V$LXRE.01 |
Nuclear receptor involved in the regulation lipid homeostasis |
| V$SATB |
Special AT-rich sequence binding protein |
V$SATB1.01 |
Special AT-rich sequence-binding protein 1, predominantly expressed in
thymocytes, binds to matrix attachment regions (MARs) |
| V$SMAD |
Vertebrate SMAD family of transcription factors |
V$FAST1.01 |
FAST-1 SMAD interacting protein |
| V$SORY |
SOx/sRY-sex/testis determining and related HMG Box factors |
V$HMGIY.01 |
(HMGI(Y) high-mobility-group protein I (Y), architectural transcription
factor organizing the framework of a nuclear protein-DNA transcriptional
complex |
| V$STAT |
Signal Transducer and Activator of Transcript. factors |
V$STAT5.01 |
STAT5: signal transducer and activator of transcription 5 |
| V$STAT6.01 |
STAT6: signal transducer and activator of transcription 6 |
| V$ZBPF |
Zinc binding protein factor |
V$ZBP89.01 |
Zinc finger transcription factor ZBP-89 |
The following matrix families have been moved to the group "Other functional
elements" as they do not describe transcription factor binding
sites:
The following matrix families have been renamed because of previously misleading
family names:
