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Matrix Family Library Version 10.0

[New weight matrices]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 10.0 (October 2016) contains 1679 weight matrices in 456 families classified into the following groups:

The vertebrate group represents binding site descriptions of 9419 transcription factors: The plant group represents binding site descriptions of 1009 transcription factors from several plant species.

The fungi group represents binding site descriptions of 141 transcription factors from Saccharomyces cerevisiae and Schizosaccharomyces pombe.


New weight matrices

Vertebrates

Family Family Information Matrix Name Matrix Information
V$EGRF EGR/nerve growth factor induced protein C & related factors V$WT1.02 Wilms Tumor Suppressor
V$GREF Glucocorticoid responsive and related elements V$MRE.01 Mineralocorticoid receptor response element
V$MYOD Myoblast determining factors V$TCF21.02 Transcription factor 21
V$NF1F Nuclear factor 1 V$NFIB.01 Nuclear factor I/B)
V$NR2F Nuclear receptor subfamily 2 factors V$COUPTFII.01 Chicken ovalbumin upstream promoter transcription factor 2, NR2F2 homodimer, DR1 sites
V$HNF4A.03 Hepatic nuclear factor 4alpha homodimer, DR1 sites (specific for HNF4A - H4-SBM)
V$HNF4A.04 Hepatic nuclear factor 4alpha homodimer, DR1 sites
V$RXRF RXR heterodimer binding sites V$RXRA.01 Retinoid X receptor alpha homodimer, DR1 sites

Plants

Family Family Information Matrix Name Matrix Information
P$AHBP Arabidopsis homeobox protein P$ATHB51.01 Homeobox 51, Late Meristem Identity 1
P$AHLF AT-hook containing transcription factors P$AHL20.01 AT-hook motif nuclear-localized protein 20
P$AP2L APETALA2-like transcription factors P$SMZ.01 Ethylene-responsive transcription factor SCHLAFMUTZE
P$TOE1.01 Target of early activation tagged 1 (RAP2.7)
P$TOE2.01 Target of early activation tagged (EAT) 2
P$ARF3 Auxin Response Factor 3 P$ETT.01 ETTIN (Auxin Response Factor 3)
P$ETT.02 ETTIN (secondary DNA binding preference)
P$CCAF Circadian control factors P$CCA1.02 Circadian clock associated 1
P$CCA1.03 Circadian clock associated 1 (secondary DNA binding preference)
P$RVE1.01 Myb family transcription factor REVEILLE1
P$DOFF DNA binding with one finger (DOF) P$DAG2.01 DOF Affecting Germination 2
P$DREB Dehydration responsive element binding factors P$DDF1.01 Dwarf and Delayed Flowering 1
P$DEAR3.01 DREB and EAR motif protein 3
P$DEAR4.01 DREB and EAR motif protein 4 (RAP2.10)
P$DREB2C.02 (Dehydration-responsive element-binding protein 2C (secondary DNA binding preference)
P$DREBA4.01 ERF/AP2 transcription factor family protein DREB A-4)
P$ORA47.01 Ethylene-responsive transcription factor ERF018
P$GARP Myb-related DNA binding proteins (Golden2, ARR, Psr) P$ARR11.01 Two-component response regulator ARR11
P$ARR14.01 Two-component response regulator ARR14)
P$ARR14.02 Two-component response regulator ARR14 (secondary DNA binding preference)
P$GBOX Plant G-box/C-box bZIP proteins P$BZIP60.01 Basic region / leucine zipper motif 60
P$TGA2.01 Transcription factor TGA2)
P$TGA2.02 Transcription factor TGA2 (secondary DNA binding preference)
P$GCCF GCC box family P$ATERF1.01 Ethylene-responsive transcription factor 1A (AT4G17500)
P$DEAR4.02 DREB and EAR motif protein 4 (RAP2.10) (secondary DNA binding preference)
P$DREB2C.01 Dehydration-responsive element-binding protein 2C
P$ERF1.01 Ethylene-responsive transcription factor 1B (AT3G23240)
P$ORA47.02 Ethylene-responsive transcription factor ERF018 (secondary DNA binding preference)
P$RAP2-3.01 Ethylene-responsive transcription factor RAP2-3
P$RAP2-3.02 Ethylene-responsive transcription factor RAP2-3 (secondary DNA binding preference)
P$RAP2-6.01 Ethylene-responsive transcription factor RAP2-6
P$RAP2-6.02 Ethylene-responsive transcription factor RAP2-6 (secondary DNA binding preference)
P$RRTF1.01 Redox responsive transcription factor 1
P$RRTF1.02 Redox responsive transcription factor 1 (secondary DNA binding preference)
P$RRTF1.03 Redox responsive transcription factor 1 (tertiary DNA binding preference)
P$GTBX GT-box elements P$GT2L.01 Trihelix transcription factor GTL2
P$HEAT Heat shock factors P$HSFB2A.01 Heat shock transcription factor B2A
P$HSFC1.01 Heat shock transcription factor C1
P$HSFC1.02 Heat shock transcription factor C1 (secondary DNA binding preference)
P$KAN1 Transcription repressor KANADI P$KAN4.01 KANADI 4 (Aberrant Testa Shape)
P$KAN4.02 KANADI 4 (Aberrant Testa Shape) (secondary DNA binding preference)
P$MIIG MYB IIG-type binding sites P$MYB111.01 Myb domain protein 111
P$MYB111.02 Myb domain protein 111 (secondary DNA binding preference)
P$MYB46.01 Myb domain protein 46
P$MYB55.01 Myb domain protein 55
P$MYB55.02 Myb domain protein 55 (secondary DNA binding preference)
P$MYB59.01 Myb domain protein 59
P$MYBL MYB-like proteins P$MYB52.01 Myb domain protein 52
P$MYCL Myc-like basic helix-loop-helix binding factors P$BES1.01 Brassinosteroid insensitive 1-EMS suppressor 1
P$PIF3.03 Phytochrome B-regulated transcription factor PIF3
P$PIF5.01 Phytochrome-interacting fator 5 (PIL6)
P$NACF Plant specific NAC [NAM (no apical meristem), ATAF172, CUC2 (cup-shaped cotyledons 2)] transcription factors P$ANAC055.01 NAC domain containing protein 3
P$REMF B3 domain-containing REM family P$REM1.01 Reproductive Meristem 1
P$REM1.02 Reproductive Meristem 1 (secondary DNA binding preference)
P$SBPD SBP-domain proteins P$SPL1.01 Squamosa promoter-binding-like protein 1
P$SPL1.02 Squamosa promoter-binding-like protein 1 (secondary DNA binding preference)
P$SCAP Stomatal Carpenter P$SCAP1.01 Stomatal Carpenter 1 (dof5.7) (secondary DNA binding preference)
P$SRSF SHI related sequence family members P$STY1.01 SHI related sequence 1 (STYLISH 1)
P$STY1.02 SHI related sequence 1 (STYLISH 1) (secondary DNA binding preference)
P$TCPF DNA-binding proteins with the plant specific TCP-domain P$TCP15.01 Transcription factor TCP15
P$TCP16.02 TCP domain protein 16
P$TCP23.01 Transcription factor TCP23
P$TOEF Target of early activation tagged factors P$TOE1.02 Target of early activation tagged 1 (RAP2.7) (tertiary DNA binding preference)
P$TOE2.02 Target of early activation tagged (EAT) 2 (secondary DNA binding preference)
P$WBXF W Box family P$WRKY12.01 WRKY DNA binding protein 12
P$WRKY18.01 WRKY DNA binding protein 18
P$WRKY38.01 WRKY DNA binding protein 38
P$WRKY45.01 WRKY DNA binding protein 45
P$WOXF WUS homeobox-containing protein family P$WOX13.01 WUSCHEL-related homeobox 13
P$ZFAT Zinc fingers of Arabidopsis thaliana P$ZAT6.01 Zinc finger of Arabidopsis thaliana 6 (Cold induced zinc finger protein 2)