[New weight matrices]
[Matrices moved to other families]
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Matrix Family Library Version 8.2 (January 2010) contains 1166 weight matrices in 386 families classified into the following groups:
| Family | Family Information | Matrix Name | Matrix Information |
|---|---|---|---|
| V$BRAC | Brachyury gene, mesoderm developmental factor | V$SPT.01 | T-box gene 16 (tbx16) of zebrafish |
| V$CEBP | Ccaat/Enhancer Binding Protein | V$CEBPA.01 | CCAAT/enhancer binding protein alpha |
| V$EREF | Estrogen response elements | V$ER.04 | Estrogen response elements, IR3 sites |
| V$ETSF | Human and murine ETS1 factors | V$ELK1.03 | ETS-like gene 1 (ELK-1) |
| V$HDBP | Huntington's disease gene regulatory region binding proteins | V$HDBP1_2.01 | Huntington's disease gene regulatory region-binding protein 1 and 2 (SLC2A4 regulator and papillomavirus binding factor) |
| V$PERO | Peroxisome proliferator-activated receptor | V$PPARG.02 | Peroxisome proliferator-activated receptor gamma |
| V$PPARG.03 | Peroxisome proliferator-activated receptor gamma, DR1 sites | ||
| V$SALL | Spalt-like transcription factors | V$SALL1.01 | Spalt-like transcription factor 1 |
| V$SRFF | Serum response element binding factor | V$SRF.04 | Serum response factor |
| V$ZBPF | Zinc binding protein factors | V$ZKSCAN3.01 | Zinc finger with KRAB and SCAN domains 3 |
| Family | Family Information | Matrix Name | Matrix Information |
|---|---|---|---|
| P$FORC | Fungal and oomycete pathogen response cluster - promoter motif | P$FORCA.01 | Promoter motif enriched in a cluster of Arabidopsis genes co-expressed during immune response |
| P$GTBX | GT-box elements | P$ASIL1.01 | Arabidopsis 6b-interacting protein 1-like 1 |
| P$HEAT | Heat shock factors | P$HSFA1A.01 | Arabidopsis thaliana class A heat shock factor 1a |
| P$MADS | MADS box proteins | P$RIN.01 | Tomato MADS-box transcription factor MADS-RIN |
| P$MYCL | Myc-like basic helix-loop-helix binding factors | P$PIL5.01 | Phytochrome interacting factor3-like 5 |
| P$PSPE | Protein secretory pathway element | P$TL1.01 | Cis-element involved in SA (salicylic acid) induction of secretion-related genes via NPR1 |
| P$WBXF | W Box family | P$WRKY11.01 | Calmodulin binding WRKY transcription factor 11 |
| Family | Family Information | Matrix Name | Matrix Information |
|---|---|---|---|
| I$ABDB | Drosophila Abd-B group | I$ABDB.01 | Abdominal B |
| I$ADGC | Activator of alcohol dehydrogenase gene, ADF-1 protein | I$ADF1.02 | Adh transcription factor 1 |
| I$BABF | BTB/POZ proteins Bric a brac | I$BAB1.01 | Bric a brac 1 |
| I$BCDF | Bicoid-like homeodomain transcription factors | I$BCD.02 | Bicoid |
| I$BEAF | Boundary element associated factor | I$BEAF32.01 | Boundary element-associated factor of 32kD |
| I$BHLH | Drosophila basic helix-loop-helix transcription factors | I$TWI.01 | Twist |
| I$CEBP | Drosophila C/EBP like bZIP transcription factors | I$SLBO.01 | Slow border cells |
| I$DCUT | Drosophila homeobox transcription factor with CUT domain | I$ONECUT.01 | Onecut transcription factor |
| I$DDVL | Drosophila Dorsal Ventral Factor | I$DL.03 | Dorsal |
| I$DE74 | Drosophila ecdysone induced protein E74A | I$EIP74EF.01 | Ecdysone-induced protein 74EF |
| I$DGTF | Drosphila giant transcription factor | I$GT.01 | Giant |
| I$DHOM | Drosophila homeoproteins | I$ABDA.01 | Abdominal A |
| I$ANTP.01 | Antennapedia | ||
| I$ANTP.02 | Antennapedia | ||
| I$AP.01 | Apterous | ||
| I$BH2.01 | BarH2 | ||
| I$BSH.01 | Brain-specific homeobox | ||
| I$BTN.01 | Buttonless | ||
| I$EMS.01 | Empty spiracles | ||
| I$EN.01 | Engrailed | ||
| I$EVE.01 | Even skipped | ||
| I$EXEX.01 | Extra-extra | ||
| I$HGTX.01 | Hgtx homeobox transcription factor | ||
| I$ODSH.01 | Ods-site homeobox | ||
| I$SLOU.01 | Slouch | ||
| I$UBX.01 | Ultrabithorax | ||
| I$ZEN.01 | Zerknullt | ||
| I$DKRU | Drosophila gap gene Krueppel | I$KR.02 | Krueppel |
| I$DOVO | Drosopohila OVO transcription factor | I$OVO.01 | Ovo/shavenbaby |
| I$DREF | DNA replication-related element factor | I$DREF.01 | DNA replication-related element factor |
| I$DSIX | Drosophila Six factors | I$SIX4.01 | Six4, myotonix |
| I$DTBX | Drosophila T-box transcription factors | I$BYN.01 | Brachyenteron |
| I$FKHD | Drosophila fork head factors | I$BIN.01 | Biniou |
| I$IRXF | Iroquois group of transcription factors | I$CAUP.01 | Iroquois-complex caupolican |
| I$MIRR.01 | Mirror | ||
| I$MADF | Mothers against decapentaplegic family of transcription factors with MH1 domain | I$MED.01 | Medea |
| I$NKXH | NK-family of homeodomain transcription factors | I$TIN.01 | Tinman |
| I$POUF | Transcription factors with POU-domain - N-terminal to homeobox domain | I$VVL.01 | Ventral veins lacking |
| I$PRDH | Paired homeodomain factors | I$PRD.01 | Paired |
| I$SSG1 | Small salivary glands-1 | I$BRK.01 | Brinker |
| I$TGIF | TGIF (TG-interacting factor)-Exd (extradenticle) group | I$ACHI.01 | Achintya |
| I$HTH.01 | Homothorax | ||
| I$VIS.01 | Vismay |
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