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Data content for all genomes available in ElDorado

(December 2017)

This table lists the number of annotated elements (if available) for each of the genomes in the most recent version of ElDorado. There is also a page on the source of elements annotated in ElDorado. To view the change of data compared to older releases please have a look at the single genome statistics on the overview page.

Organism Genome build Loci Transcripts Promoters Homology groups TSRs Promoter models microRNAs SNPs TFBS affected by SNPs Proteins affected by SNPs SMARs Repeats
human (Homo sapiens) GRCh38 43,153 335,553 150,631 19,205 1,047,166 3,075,044 2,069 289,703,492 1,363,785,885 48,950,701 365,688 1,569,245
mouse (Mus musculus) NCBI build 38 54,151 251,097 133,748 19,008 652,478 2,429,936 1,399 70,436,622 313,510,240 1,230,901 179,235 480,787
rat (Rattus norvegicus) Rnor 6.0 32,895 115,601 91,304 18,842 0 1,673,548 558 4,595,134 20,179,591 68,628 170,107 330,195
cow (Bos taurus) Bos taurus UMD 3.1.1 27,214 93,829 80,095 17,891 0 1,706,611 876 85,331,503 390,196,143 10,633,304 269,225 0
dog (Canis lupus familiaris) NCBI build 3 26,189 80,324 82,542 17,373 0 1,889,748 546 4,711,650 20,652,434 138,896 308,380 0
horse (Equus caballus) NCBI build 2 28,660 68,544 83,183 15,953 0 1,531,667 744 4,998,808 21,847,662 73,239 255,643 0
pig (Sus scrofa) NCBI build 4 36,020 94,794 83,737 15,853 0 1,701,996 450 54,949,283 248,810,451 650,280 270,053 0
rhesus monkey (Macaca mulatta) Mmul 8.0.1 28,669 105,058 102,307 18,414 0 2,070,973 646 50,168,059 227,477,024 732,472 345,736 1,547,518
chimp (Pan troglodytes) Pan tro 3.0 32,213 122,425 108,379 19,556 0 2,257,183 1,097 1,600,567 7,336,762 25,106 375,410 1,565,370
duck-billed platypus (Ornithorhynchus anatinus) NCBI build 1 2,906 8,119 7,730 2,013 0 129,006 106 322,817 1,467,804 2,001 8,708 0
rabbit (Oryctolagus cuniculus) NCBI build 1 24,796 63,502 67,947 14,926 0 1,401,073 104 0 0 0 266,922 0
opossum (Monodelphis domestica) NCBI build 2 33,409 87,852 71,080 14,018 0 1,342,489 551 1,161,966 5,700,266 10,395 538,710 0
Mammalia 370,275 1,426,698 1,062,683 193,052 1,699,644 21,209,274 9,146 567,979,901 2,620,964,262 62,515,923 3,353,817 5,493,115
zebrafish (Danio rerio) GRCz10 32,968 102,686 63,062 14,155 0 891,424 818 14,342,815 85,316,220 281,206 357,335 0
chicken (Gallus gallus) Gallus gallus 5.0 24,881 85,427 59,554 13,843 0 1,322,615 834 20,894,338 91,786,400 1,056,697 61,270 0
zebra finch (Taeniopygia guttata) Taeniopygia guttata 3.2.4 18,907 40,051 41,220 11,897 0 750,584 242 1,674,447 7,506,049 9,355 98,519 0
western clawed frog (Xenopus tropicalis) Xenopus tropicalis v9.1 24,453 62,346 49,963 14,197 0 723,525 261 0 0 0 96,985 0
Vertebrates 471,484 1,717,208 1,276,482 247,144 1,699,644 24,897,422 11,301 604,891,501 2,805,572,931 63,863,181 3,967,926 5,493,115
thale cress (Arabidopsis thaliana) TAIR 10 31,444 61,450 37,755 10,086 0 114,017 363 11,590,482 36,949,663 2,313,691 22,891 0
soybean (Glycine max) Glycine max v2.0 52,206 86,836 60,461 13,656 0 180,265 613 13,522,115 42,227,276 371,640 223,846 0
rice (Oryza sativa) MSU release 7 33,585 83,944 45,019 11,836 0 131,370 608 11,246,034 30,146,069 897,943 48,792 0
western balsam poplar (Populus trichocarpa) Poptr 2.0 41,310 46,326 45,016 11,993 0 117,995 0 0 0 0 109,227 0
sorghum (Sorghum bicolor) NCBI build 0.1c 32,573 33,084 39,174 10,937 0 98,489 205 6,938,096 17,625,281 178,507 50,112 0
wine grape (Vitis vinifera) NCBI build 2 26,993 46,432 32,714 9,002 0 89,966 155 451,576 1,082,301 128,044 101,884 0
corn (Zea mays) B73 Ref Gen 3 53,501 203,904 77,431 13,742 0 191,621 165 46,733,628 117,745,152 3,848,719 96,366 0
Plants 271,612 561,976 337,570 81,252 0 923,723 2,109 90,481,931 245,775,742 7,738,544 653,118 0
mosquito (Anopheles gambiae) AgamP4 13,357 32,442 15,176 5,110 0 0 68 1,982,261 772,305 95,330 0 0
honeybee (Apis mellifera) NCBI build 5 12,811 28,113 20,040 6,209 0 0 243 4,193,725 5,169,549 79,217 0 0
carpenter ant (Camponotus floridanus) UPenn 3.3 16,055 17,354 18,025 7,454 0 0 2 0 0 0 0 0
fruitfly (Drosophila melanogaster) Dmel R6 16,415 34,600 21,311 5,045 0 0 258 5,261,353 5,432,149 1,038,784 0 0
jumping ant (Harpegnathos saltator) UPenn 3.3 19,222 22,330 21,064 7,485 0 0 2 0 0 0 0 0
Insects 77,860 134,839 95,616 31,303 0 0 573 11,437,339 11,374,003 1,213,331 0 0
Neurospora crassa (Neurospora crassa) Broad NC12 9,974 12,911 10,198 0 0 0 0 0 0 0 0 0
baker's yeast (Saccharomyces cerevisiae) NCBI build 3.1 6,653 6,929 6,694 0 0 0 0 0 0 0 0 0
fission yeast (Schizosaccharomyces pombe) NCBI build 1 4,765 5,168 5,087 0 0 0 0 0 0 0 0 0
Fungi 21,392 25,008 21,979 0 0 0 0 0 0 0 0 0
nematode (Caenorhabditis elegans) WS244 41,822 78,532 48,908 0 0 661,514 254 171,760 916,306 53,686 0 0
plasmodium (Plasmodium falciparum) ASM276v1 5,288 5,345 5,298 0 0 40,410 0 491,074 4,030,567 172,805 0 0
Total 889,458 2,522,908 1,785,853 359,699 1,699,644 26,523,069 14,237 707,473,605 3,067,669,549 73,041,547 4,621,044 5,493,115