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ElDorado Statistics for Danio rerio Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

GRCz10
GRCz10
GRCz10
GRCz10
NCBI build 5
NCBI build 5
NCBI build 4

# Contigs

1,061
1,061
1,061
1,061
1,133
1,133
11,542

# Basepairs

1,371,719,383
1,371,719,383
1,371,719,383
1,371,719,383
1,412,464,843
1,412,464,843
1,480,771,230

# Gene Loci

32,968
30,888
30,612
28,940
27,712
28,802
28,927

# Primary Transcripts

102,686
103,041
89,138
78,030
61,140
65,699
65,148
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
1,790
1,763
1,148
1,059
881
845
774
# bronze
100,896
101,278
87,990
76,971
60,259
64,854
64,374

# Promoter Regions

63,062
59,923
56,687
53,995
50,684
54,288
52,534
# promoters associated with transcript
52,655
50,090
47,175
45,311
41,960
46,174
45,595
# promoters based on Comparative Genomics
10,407
9,833
9,512
8,684
8,724
8,114
6,939

# PromoterInspector Predictions

14,271
14,271
14,271
14,271
14,718
14,718
14,858

# Homology groups

14,155
13,885
13,861
13,856
13,787
14,127
13,659

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

14,342,815
14,342,815
14,342,815
1,222,345
1,219,609
1,226,184
499,984
# peptides affected by SNPs
281,206
294,463
271,416
46,835
28,931
26,102
14,674
# TF sites affected by SNPs
85,316,220
90,448,598
90,315,591
7,347,177
6,285,484
6,296,376
2,525,670

# Module matches in promoters

891,424
823,472
421,585
394,866
366,058
361,349
365,726

# SMARs

357,335
357,335
357,335
357,335
366,496
366,496
385,126

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

818
818
818
826
846
860
855
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
239,027
243,250
212,448
232,851
175,234
180,716
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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