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ElDorado Statistics for Taeniopygia guttata Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Taeniopygia guttata 3.2.4
Taeniopygia guttata 3.2.4
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1

# Contigs

37,096
37,096
36
36
36
36
36

# Basepairs

1,232,135,591
1,232,135,591
1,021,479,793
1,021,479,793
1,021,479,793
1,021,479,793
1,021,479,793

# Gene Loci

18,907
18,907
14,216
13,664
13,820
13,850
13,824

# Primary Transcripts

40,051
41,568
27,010
22,610
26,743
28,632
33,818
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
12,236
12,709
7,764
6,425
8,300
7,554
7,756
# bronze
27,815
28,859
19,246
16,185
18,443
21,078
26,062

# Promoter Regions

41,220
40,378
32,095
29,608
31,889
34,033
33,735
# promoters associated with transcript
28,109
28,110
19,961
17,987
20,892
21,726
26,960
# promoters based on Comparative Genomics
13,111
12,268
12,134
11,621
10,997
12,307
6,775

# PromoterInspector Predictions

18,587
18,587
14,949
14,949
14,949
14,949
14,949

# Homology groups

11,897
11,833
10,333
10,183
10,651
10,533
10,417

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

1,674,447
1,674,447
1,675,678
1,675,679
1,674,482
1,674,482
1,675,221
# peptides affected by SNPs
9,355
9,355
8,652
3,786
2,620
3,774
4,256
# TF sites affected by SNPs
7,506,049
7,995,886
7,982,173
7,721,559
6,570,085
6,520,335
6,329,805

# Module matches in promoters

750,584
710,079
323,416
296,253
323,090
307,229
288,003

# SMARs

98,519
98,519
84,674
84,674
84,674
84,674
84,674

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

242
242
242
242
241
279
214
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
72,837
73,552
53,172
48,959
60,376
56,299
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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