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ElDorado Statistics for Vitis vinifera Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 05-2016 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011
Genome Version
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 1c

# Contigs

1,913
1,913
1,913
1,913
1,913
1,913
21

# Basepairs

486,260,629
486,260,629
486,260,629
486,260,629
486,260,629
486,260,629
304,020,027

# Gene Loci

26,993
26,069
26,069
22,475
22,636
22,463
17,565

# Primary Transcripts

46,432
42,082
42,080
23,996
23,984
25,312
20,270
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
46,432
42,082
42,080
23,996
23,984
25,312
20,270

# Promoter Regions

32,714
31,252
31,280
25,371
26,281
26,230
20,881
# promoters associated with transcript
30,101
28,683
28,714
22,812
22,955
24,176
19,209
# promoters based on Comparative Genomics
2,613
2,569
2,566
2,559
3,326
2,054
1,672

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

9,002
8,953
8,952
9,069
9,237
9,244
7,322

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

451,576
451,576
451,190
459,489
460,045
460,045
421,482
# peptides affected by SNPs
128,044
121,692
121,657
35,781
35,495
37,337
28,749
# TF sites affected by SNPs
1,082,301
796,702
659,146
611,211
581,913
547,014
455,351

# Module matches in promoters

89,966
66,660
34,862
26,150
26,575
19,206
20,968

# SMARs

101,884
101,884
101,884
101,884
101,884
101,884
64,161

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

155
155
155
165
164
164
126

Matrix-Library

Version 11.0
(621 plant matrices)
Version 10.0
(293 plant matrices)
Version 9.4
(223 plant matrices)
Version 9.3
(217 plant matrices)
Version 9.1
(209 plant matrices)
Version 9.0
(191 plant matrices)
Version 8.4
(182 plant matrices)

Module-Library

Version 6.2
(111 plant modules)
Version 6.1
(105 plant modules)
Version 6.0
(105 plant modules)
Version 5.9
(98 plant modules)
Version 5.7
(97 plant modules)
Version 5.6
(90 plant modules)
Version 5.5
(86 plant modules)

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