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ElDorado Statistics for Xenopus tropicalis Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Xenopus tropicalis v9.1
Xtropicalis v7
Xtropicalis v7
Xtropicalis v7
NCBI build 1
NCBI build 1
NCBI build 1

# Contigs

6,822
7,728
7,728
7,728
19,550
19,550
19,550

# Basepairs

1,440,398,454
1,437,530,879
1,437,530,879
1,437,530,879
1,511,735,326
1,511,735,326
1,511,735,326

# Gene Loci

24,453
17,538
16,588
23,924
22,834
23,981
24,153

# Primary Transcripts

62,346
23,177
24,396
47,299
49,536
40,102
46,798
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
2,956
854
633
1,408
1,407
1,378
1,709
# bronze
59,390
22,323
23,763
45,891
48,129
38,724
45,089

# Promoter Regions

49,963
30,014
29,022
43,676
41,797
43,299
45,166
# promoters associated with transcript
37,748
19,112
18,900
32,919
32,191
31,134
35,628
# promoters based on Comparative Genomics
12,215
10,902
10,122
10,757
9,606
12,165
9,538

# PromoterInspector Predictions

26,546
26,523
26,523
26,523
27,212
27,212
27,212

# Homology groups

14,197
10,665
10,632
14,306
12,018
12,132
11,992

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

not available
not available
not available
not available
not available
not available
not available
# peptides affected by SNPs
not available
not available
not available
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

723,525
412,674
221,401
333,461
316,085
303,390
321,697

# SMARs

96,985
96,938
96,938
96,938
95,829
95,829
95,829

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

261
261
261
261
262
261
not available
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
146,747
40,815
45,401
129,717
118,017
91,540
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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