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ElDorado Statistics for Populus trichocarpa Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 05-2016 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011
Genome Version
Poptr 2.0
Poptr 2.0
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 1c

# Contigs

2,514
2,514
20
20
20
20
20

# Basepairs

417,286,671
417,286,671
307,997,801
307,997,801
307,997,801
307,997,801
307,997,801

# Gene Loci

41,310
41,310
30,313
30,313
29,059
29,001
29,001

# Primary Transcripts

46,326
46,326
37,550
37,550
33,256
33,716
33,743
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
46,326
46,326
37,550
37,550
33,256
33,716
33,743

# Promoter Regions

45,016
44,885
34,480
34,652
33,031
33,101
33,130
# promoters associated with transcript
42,119
42,120
32,136
32,135
30,542
31,302
31,318
# promoters based on Comparative Genomics
2,897
2,765
2,344
2,517
2,489
1,799
1,812

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

11,993
12,004
9,951
10,025
9,816
9,899
9,851

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

not available
not available
not available
not available
not available
not available
not available
# peptides affected by SNPs
not available
not available
not available
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

117,995
88,894
35,015
35,087
31,308
22,482
31,276

# SMARs

109,227
109,227
78,994
78,994
78,994
78,994
78,994

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

not available
not available
not available
not available
not available
not available
not available

Matrix-Library

Version 11.0
(621 plant matrices)
Version 10.0
(293 plant matrices)
Version 9.4
(223 plant matrices)
Version 9.3
(217 plant matrices)
Version 9.1
(209 plant matrices)
Version 9.0
(191 plant matrices)
Version 8.4
(182 plant matrices)

Module-Library

Version 6.2
(111 plant modules)
Version 6.1
(105 plant modules)
Version 6.0
(105 plant modules)
Version 5.9
(98 plant modules)
Version 5.7
(97 plant modules)
Version 5.6
(90 plant modules)
Version 5.5
(86 plant modules)

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