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ElDorado Statistics for Sorghum bicolor Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 05-2016 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011
Genome Version
NCBI build 0.1c
NCBI build 0.1c
NCBI build 0.1c
NCBI build 0.1c
NCBI build 0.1c
NCBI build 0.1c
NCBI build 0.1c

# Contigs

12
12
12
12
12
12
12

# Basepairs

659,838,749
659,838,749
659,838,749
659,838,749
659,838,749
659,838,749
659,838,749

# Gene Loci

32,573
32,573
32,573
32,573
32,573
32,281
32,281

# Primary Transcripts

33,084
33,084
33,084
33,084
33,085
35,792
35,813
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
33,084
33,084
33,084
33,084
33,085
35,792
35,813

# Promoter Regions

39,174
38,974
38,909
39,404
38,914
38,647
38,761
# promoters associated with transcript
32,706
32,705
32,710
32,710
32,711
35,546
35,567
# promoters based on Comparative Genomics
6,468
6,269
6,199
6,694
6,203
3,101
3,194

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

10,937
10,992
10,981
11,082
11,017
11,272
11,311

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

6,938,096
6,938,096
1,283,425
1,253,970
1,253,697
not available
not available
# peptides affected by SNPs
178,507
178,507
49,810
13,022
13,021
not available
not available
# TF sites affected by SNPs
17,625,281
13,278,777
1,913,303
1,685,208
1,607,022
not available
not available

# Module matches in promoters

98,489
80,161
35,758
34,583
33,649
23,247
34,226

# SMARs

50,112
50,112
50,112
50,112
50,112
50,112
50,112

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

205
205
205
205
205
206
148

Matrix-Library

Version 11.0
(621 plant matrices)
Version 10.0
(293 plant matrices)
Version 9.4
(223 plant matrices)
Version 9.3
(217 plant matrices)
Version 9.1
(209 plant matrices)
Version 9.0
(191 plant matrices)
Version 8.4
(182 plant matrices)

Module-Library

Version 6.2
(111 plant modules)
Version 6.1
(105 plant modules)
Version 6.0
(105 plant modules)
Version 5.9
(98 plant modules)
Version 5.7
(97 plant modules)
Version 5.6
(90 plant modules)
Version 5.5
(86 plant modules)

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