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ElDorado Statistics for Oryza sativa Genome

ElDorado 08-2011 ElDorado 12-2010 ElDorado 02-2010 ElDorado 07-2009
Genome Version
TIGR release 6
TIGR release 6
TIGR release 6
TIGR release 6

# Contigs

13
13
13
13

# Basepairs

372,808,087
372,808,087
372,808,087
372,808,087

# Gene Loci

30,669
30,669
30,162
30,146

# Primary Transcripts

63,370
63,339
60,427
59,710
# gold
32,221
32,221
32,221
32,272
# silver
not available
not available
not available
not available
# bronze
31,149
31,118
28,206
27,438

# Promoter Regions

38,610
38,627
35,618
33,845
# promoters associated with transcript
36,113
36,086
34,604
not available
# promoters based on Comparative Genomics
2,497
2,541
1,014
not available

# PromoterInspector Predictions

not available
not available
not available
not available

# Homology groups

11,628
11,553
11,846
9,917

# TSR

28,917
28,917
28,917
28,892

# SNPs

4,205,157
3,928,240
1,897,473
1,897,473
# peptides affected by SNPs
335,446
334,938
155,869
155,301
# TF sites affected by SNPs
5,386,696
4,409,778
2,061,346
1,974,226

# Module matches in promoters

40,851
39,155
33,565
29,140

# SMARs

48,693
48,693
48,693
48,693

# Repeats

not available
not available
not available
not available

# microRNAs

481
462
352
362

Matrix-Library

Version 8.4
(182 plant matrices)
Version 8.3
(173 plant matrices)
Version 8.2
(165 plant matrices)
Version 8.1
(158 plant matrices)

Module-Library

Version 5.5
(86 plant modules)
Version 5.4
(75 plant modules)
Version 5.3
(71 plant modules)
Version 5.2
(70 plant modules)