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ElDorado Statistics for Oryza sativa Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 05-2016 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011
Genome Version
MSU release 7
MSU release 7
MSU release 7
MSU release 7
MSU release 7
MSU release 7
TIGR release 6

# Contigs

14
14
14
14
14
14
13

# Basepairs

373,870,564
373,870,564
373,870,564
373,870,564
373,870,564
373,870,564
372,808,087

# Gene Loci

33,585
33,585
30,802
30,802
30,807
30,686
30,669

# Primary Transcripts

83,944
83,944
62,183
61,630
61,640
61,269
63,370
# gold
33,026
33,026
33,026
32,474
32,479
32,232
32,221
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
50,918
50,918
29,157
29,156
29,161
29,037
31,149

# Promoter Regions

45,019
44,902
38,292
38,585
38,578
38,604
38,610
# promoters associated with transcript
40,919
40,924
34,199
34,197
34,201
34,034
36,113
# promoters based on Comparative Genomics
4,100
3,978
4,093
4,388
4,377
4,570
2,497

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

11,836
11,917
11,217
11,329
11,513
11,677
11,628

# TSR

not available
not available
not available
not available
29,104
28,926
28,917

# SNPs

11,246,034
11,245,872
9,746,344
9,746,344
9,747,182
4,172,497
4,205,157
# peptides affected by SNPs
897,943
897,943
502,440
612,884
612,914
331,511
335,446
# TF sites affected by SNPs
30,146,069
22,559,222
16,396,329
14,527,082
13,852,245
5,566,339
5,386,696

# Module matches in promoters

131,370
105,532
40,478
38,643
38,529
27,713
40,851

# SMARs

48,792
48,792
48,792
48,792
48,792
48,792
48,693

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

608
608
608
608
608
593
481

Matrix-Library

Version 11.0
(621 plant matrices)
Version 10.0
(293 plant matrices)
Version 9.4
(223 plant matrices)
Version 9.3
(217 plant matrices)
Version 9.1
(209 plant matrices)
Version 9.0
(191 plant matrices)
Version 8.4
(182 plant matrices)

Module-Library

Version 6.2
(111 plant modules)
Version 6.1
(105 plant modules)
Version 6.0
(105 plant modules)
Version 5.9
(98 plant modules)
Version 5.7
(97 plant modules)
Version 5.6
(90 plant modules)
Version 5.5
(86 plant modules)

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