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ElDorado Statistics for Macaca mulatta Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Mmul 8.0.1
Mmul 8.0.1
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 1

# Contigs

284,728
284,728
122,145
122,145
122,145
122,145
22

# Basepairs

3,236,224,332
3,236,224,332
3,097,387,291
3,097,387,291
3,097,387,291
3,097,387,291
2,863,681,749

# Gene Loci

28,669
30,055
26,670
26,682
27,524
26,704
25,258

# Primary Transcripts

105,058
102,649
51,300
51,235
67,232
93,696
92,114
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
37,912
36,492
13,982
13,947
18,507
19,516
19,529
# bronze
67,146
66,157
37,318
37,288
48,725
74,180
72,585

# Promoter Regions

102,307
101,525
86,293
80,403
85,105
85,036
81,951
# promoters associated with transcript
52,671
51,991
35,671
35,649
43,410
69,665
67,837
# promoters based on Comparative Genomics
49,636
49,534
50,622
44,754
41,695
15,371
14,114

# PromoterInspector Predictions

20,227
20,227
17,307
17,307
17,307
17,307
15,661

# Homology groups

18,414
18,809
17,857
17,889
18,595
18,755
16,820

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

50,168,059
30,912,544
3,014,763
2,996,963
2,995,095
2,995,095
736
# peptides affected by SNPs
732,472
348,368
18,290
12,630
15,787
21,111
56
# TF sites affected by SNPs
227,477,024
149,918,935
15,223,983
14,629,066
12,395,726
12,291,081
2,634

# Module matches in promoters

2,070,973
1,943,424
919,234
852,210
905,246
840,900
776,579

# SMARs

345,736
345,736
335,173
335,173
335,173
335,173
323,276

# Repeats

1,547,518
1,493,650
1,410,248
1,455,135
1,463,681
1,448,170
1,377,429
# ALU
1,141,593
1,091,224
1,016,251
1,052,405
1,067,840
1,048,884
989,036
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
344,219
344,970
332,473
341,088
334,199
337,644
331,499
# THE
61,706
57,456
61,524
61,642
61,642
61,642
56,894

# microRNAs

646
646
645
784
781
884
461
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
not available
233,842
100,299
141,885
188,890
205,794
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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