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ElDorado Statistics for Rattus norvegicus Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Rnor 6.0
Rnor 6.0
Rnor 6.0
Rnor 6.0
NCBI build 5
NCBI build 4
NCBI build 4

# Contigs

955
955
955
955
2,739
22
22

# Basepairs

2,870,184,193
2,870,184,193
2,870,184,193
2,870,184,193
2,909,698,938
2,718,897,334
2,718,897,334

# Gene Loci

32,895
31,540
31,379
32,692
26,886
25,564
25,564

# Primary Transcripts

115,601
112,315
100,220
98,541
40,246
73,624
73,554
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
24,747
23,831
19,878
18,945
7,885
10,656
10,640
# bronze
90,854
88,484
80,342
79,596
32,361
62,968
62,914

# Promoter Regions

91,304
87,224
87,890
86,004
67,884
69,427
67,809
# promoters associated with transcript
52,916
49,229
49,326
49,825
31,615
54,960
54,873
# promoters based on Comparative Genomics
38,388
37,995
38,564
36,179
36,269
14,467
12,936

# PromoterInspector Predictions

13,730
13,730
13,730
13,730
11,284
10,476
10,476

# Homology groups

18,842
18,875
18,796
19,010
19,276
18,624
18,355

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

4,595,134
4,595,436
4,595,436
4,601,180
4,572,262
5,023,842
2,572,483
# peptides affected by SNPs
68,628
61,721
60,617
53,646
17,611
28,242
16,213
# TF sites affected by SNPs
20,179,591
21,489,918
21,434,813
20,641,189
17,397,075
18,839,988
9,271,734

# Module matches in promoters

1,673,548
1,519,195
907,397
870,205
682,583
639,761
594,527

# SMARs

170,107
170,107
170,107
170,107
161,305
149,187
149,187

# Repeats

330,195
315,972
330,195
329,883
317,854
318,990
318,990
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
181,402
181,402
181,402
181,402
178,751
164,994
164,994
# L1
148,793
134,570
148,793
148,481
139,103
153,996
153,996
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

558
558
558
560
490
572
405
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
247,152
229,944
208,115
278,920
110,406
155,262
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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