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ElDorado Statistics for Ornithorhynchus anatinus Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1

# Contigs

20
20
20
20
20
20
20

# Basepairs

437,097,043
437,097,043
437,097,043
437,097,043
437,097,043
437,097,043
437,097,043

# Gene Loci

2,906
2,906
3,005
3,011
2,629
2,596
2,642

# Primary Transcripts

8,119
8,197
6,027
6,079
5,370
7,861
7,566
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
1,294
1,296
911
910
688
714
674
# bronze
6,825
6,901
5,116
5,169
4,682
7,147
6,892

# Promoter Regions

7,730
7,699
7,094
6,879
6,757
7,543
7,155
# promoters associated with transcript
5,139
5,141
4,285
4,315
4,409
6,007
5,878
# promoters based on Comparative Genomics
2,591
2,558
2,809
2,564
2,348
1,536
1,277

# PromoterInspector Predictions

3,713
3,713
3,713
3,713
3,713
3,713
3,713

# Homology groups

2,013
2,002
1,976
1,979
2,026
2,038
2,007

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

322,817
323,053
323,053
323,053
322,523
322,523
320,100
# peptides affected by SNPs
2,001
2,001
1,658
1,281
352
699
725
# TF sites affected by SNPs
1,467,804
1,560,590
1,556,632
1,507,525
1,281,359
1,270,312
1,225,213

# Module matches in promoters

129,006
124,490
62,789
59,768
57,910
59,374
55,669

# SMARs

8,708
8,708
8,708
8,708
8,708
8,708
8,708

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

106
106
106
106
106
99
92
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
17,993
17,867
12,836
14,152
13,059
13,971
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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