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ElDorado Statistics for Plasmodium falciparum Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

ASM276v1
ASM276v1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1
NCBI build 1

# Contigs

15
15
15
15
15
15
15

# Basepairs

23,270,305
23,270,305
22,866,202
22,866,202
22,866,202
22,866,202
22,866,202

# Gene Loci

5,288
5,267
5,183
5,183
5,188
5,170
5,170

# Primary Transcripts

5,345
5,312
5,253
5,253
5,258
5,203
5,203
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
5,345
5,312
5,253
5,253
5,258
5,203
5,203

# Promoter Regions

5,298
5,271
5,191
5,191
5,196
5,178
5,178
# promoters associated with transcript
not available
not available
not available
not available
not available
not available
not available
# promoters based on Comparative Genomics
not available
not available
not available
not available
not available
not available
not available

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

not available
not available
not available
not available
not available
not available
not available

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

491,074
491,074
470,102
470,102
463,749
101,016
103,053
# peptides affected by SNPs
172,805
172,803
163,468
780
728
182
193
# TF sites affected by SNPs
4,030,567
4,254,781
4,083,911
3,555,135
3,067,341
680,373
686,137

# Module matches in promoters

40,410
39,679
20,760
20,540
20,588
19,064
20,656

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

not available
not available
not available
not available
not available
not available
not available
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
6,835
6,830
6,376
6,622
6,577
6,370
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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