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ElDorado Statistics for Sus scrofa Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

NCBI build 4
NCBI build 4
NCBI build 4
NCBI build 4
NCBI build 4
NCBI build 4
NCBI build 2

# Contigs

4,583
4,583
4,583
4,583
4,583
4,583
20

# Basepairs

2,808,525,991
2,808,525,991
2,808,525,991
2,808,525,991
2,808,525,991
2,808,525,991
2,262,501,414

# Gene Loci

36,020
36,019
32,210
32,101
25,090
23,811
20,972

# Primary Transcripts

94,794
97,437
67,263
66,498
49,966
61,622
50,668
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
25,037
25,541
16,479
16,343
12,549
12,256
9,669
# bronze
69,757
71,896
50,784
50,155
37,417
49,366
40,999

# Promoter Regions

83,737
82,968
74,652
72,040
63,119
62,999
52,444
# promoters associated with transcript
53,924
53,915
43,729
43,456
35,426
48,749
41,067
# promoters based on Comparative Genomics
29,813
29,053
30,923
28,584
27,693
14,250
11,377

# PromoterInspector Predictions

18,344
18,344
18,344
18,344
18,344
18,344
16,607

# Homology groups

15,853
15,844
15,255
15,164
15,767
15,530
13,472

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

54,949,283
51,672,464
51,672,466
26,283,723
26,187,067
423,664
5,057
# peptides affected by SNPs
650,280
609,093
396,986
124,226
65,937
14,120
278
# TF sites affected by SNPs
248,810,451
246,078,754
245,464,794
118,519,805
99,953,729
1,504,818
16,500

# Module matches in promoters

1,701,996
1,607,999
854,017
816,574
723,788
670,935
514,799

# SMARs

270,053
270,053
270,053
270,053
270,053
270,053
237,449

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

450
450
450
499
323
421
213
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
163,179
160,375
105,778
136,105
117,442
120,630
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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