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ElDorado Statistics for Monodelphis domestica Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2

# Contigs

10
10
10
10
10
10
10

# Basepairs

3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117
3,502,390,117

# Gene Loci

33,409
33,409
32,983
32,984
21,639
20,058
21,521

# Primary Transcripts

87,852
88,257
70,079
70,070
39,319
56,138
56,853
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
16,865
16,622
11,121
11,164
6,210
6,482
6,268
# bronze
70,987
71,635
58,958
58,906
33,109
49,656
50,585

# Promoter Regions

71,080
70,895
65,775
64,589
47,700
48,195
49,436
# promoters associated with transcript
51,912
51,927
46,105
46,118
30,677
39,139
41,255
# promoters based on Comparative Genomics
19,168
18,968
19,670
18,471
17,023
9,056
8,181

# PromoterInspector Predictions

12,419
12,419
12,419
12,419
12,419
12,419
12,419

# Homology groups

14,018
14,014
13,754
13,715
13,792
13,849
13,933

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

1,161,966
1,163,514
1,163,514
1,163,514
1,163,564
1,163,564
1,163,484
# peptides affected by SNPs
10,395
10,546
9,032
8,281
1,140
1,645
1,725
# TF sites affected by SNPs
5,700,266
6,082,890
6,069,678
5,794,437
4,936,398
4,904,041
4,785,195

# Module matches in promoters

1,342,489
1,289,297
669,737
646,396
476,907
433,890
421,657

# SMARs

538,710
538,710
538,710
538,710
538,710
538,710
538,710

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

551
551
551
551
551
176
150
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
196,725
181,516
139,489
225,332
132,743
149,181
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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