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ElDorado Statistics for Neurospora crassa Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Broad NC12
Broad NC12
Broad NC12
Broad NC12
Broad NC12
Broad NC10
Broad NC10

# Contigs

21
21
21
21
21
21
21

# Basepairs

41,102,378
41,102,378
41,102,378
41,102,378
41,102,378
41,102,378
41,102,378

# Gene Loci

9,974
9,974
9,974
9,790
9,790
9,790
9,790

# Primary Transcripts

12,911
12,911
12,911
9,837
9,837
9,836
9,836
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
12,911
12,911
12,911
9,837
9,837
9,836
9,836

# Promoter Regions

10,198
10,200
10,232
9,799
9,799
9,799
9,799
# promoters associated with transcript
not available
not available
not available
not available
not available
not available
not available
# promoters based on Comparative Genomics
not available
not available
not available
not available
not available
not available
not available

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

not available
not available
not available
not available
not available
not available
not available

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

not available
not available
not available
not available
not available
not available
not available
# peptides affected by SNPs
not available
not available
not available
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

not available
not available
not available
not available
not available
not available
not available
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
13,732
13,677
13,974
12,430
12,420
12,218
not available

Matrix-Library

Version 11.0
(157 fungi matrices)
Version 10.0
(157 fungi matrices)
Version 9.4
(157 fungi matrices)
Version 9.3
(155 fungi matrices)
Version 9.1
(155 fungi matrices)
Version 9.0
(155 fungi matrices)
Version 8.4
(149 fungi matrices)

Module-Library

Version 6.2
(1 fungi module)
Version 6.1
(1 fungi module)
Version 6.0
(1 fungi module)
Version 5.9
(1 fungi module)
Version 5.7
(1 fungi module)
Version 5.6
(1 fungi module)
Version 5.5
(1 fungi module)

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