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ElDorado Statistics for Equus caballus Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2
NCBI build 2

# Contigs

33
33
33
33
33
33
33

# Basepairs

2,367,070,107
2,367,070,107
2,367,070,107
2,367,070,107
2,367,070,107
2,367,070,107
2,367,070,107

# Gene Loci

28,660
28,660
27,352
27,361
25,203
25,027
24,853

# Primary Transcripts

68,544
69,510
47,001
46,912
44,385
67,412
65,483
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
16,536
16,485
9,891
9,911
8,395
9,228
8,724
# bronze
52,008
53,025
37,110
37,001
35,990
58,184
56,759

# Promoter Regions

83,183
82,546
76,636
73,524
69,133
71,826
70,278
# promoters associated with transcript
42,492
42,500
33,482
33,452
32,813
55,616
55,383
# promoters based on Comparative Genomics
40,691
40,046
43,154
40,072
36,320
16,210
14,895

# PromoterInspector Predictions

16,542
16,542
16,542
16,542
16,542
16,542
16,542

# Homology groups

15,953
15,964
15,434
15,433
16,101
16,065
15,907

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

4,998,808
4,998,761
4,998,740
4,904,949
1,131,800
1,131,800
1,132,761
# peptides affected by SNPs
73,239
73,215
49,794
28,780
1,777
3,465
3,593
# TF sites affected by SNPs
21,847,662
23,269,069
23,202,690
21,975,843
4,421,571
4,384,955
4,262,285

# Module matches in promoters

1,531,667
1,439,621
762,780
721,738
678,088
652,558
607,273

# SMARs

255,643
255,643
255,643
255,643
255,643
255,643
255,643

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

744
744
744
744
367
497
346
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
148,160
141,870
89,607
123,959
125,034
142,682
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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