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ElDorado Statistics for Apis mellifera Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

NCBI build 5
NCBI build 5
NCBI build 5
NCBI build 5
NCBI build 5
NCBI build 5
NCBI build 4

# Contigs

5,321
5,321
5,321
5,321
5,321
5,321
17

# Basepairs

250,287,000
250,287,000
250,287,000
250,287,000
250,287,000
250,287,000
217,211,219

# Gene Loci

12,811
12,604
12,604
12,604
10,747
10,573
6,759

# Primary Transcripts

28,113
27,100
27,097
27,096
11,678
11,694
7,338
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
28,113
27,100
27,097
27,096
11,678
11,694
7,338

# Promoter Regions

20,040
19,385
19,436
19,440
14,009
13,785
8,889
# promoters associated with transcript
17,365
16,745
16,793
16,796
11,249
11,209
7,188
# promoters based on Comparative Genomics
2,675
2,640
2,643
2,644
2,760
2,576
1,701

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

6,209
6,328
6,327
6,329
6,334
6,307
4,915

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

4,193,725
1,068,483
1,068,483
1,102,030
1,095,581
1,100,822
1,020,026
# peptides affected by SNPs
79,217
18,840
18,838
21,168
5,027
5,159
1,108
# TF sites affected by SNPs
5,169,549
1,426,156
1,426,156
1,141,373
1,128,888
1,138,155
1,022,597

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

243
243
243
259
222
222
160
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
53,485
53,467
54,637
62,783
25,376
23,787
not available

Matrix-Library

Version 11.0
(92 insect matrices)
Version 10.0
(92 insect matrices)
Version 9.4
(92 insect matrices)
Version 9.3
(92 insect matrices)
Version 9.1
(91 insect matrices)
Version 9.0
(91 insect matrices)
Version 8.4
(91 insect matrices)

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