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ElDorado Statistics for Drosophila melanogaster Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Dmel R6
Dmel R6
Dmel R6
Dmel R6
NCBI build 5.41
NCBI build 5.41
NCBI build 5

# Contigs

1,870
1,870
1,870
1,870
8
8
7

# Basepairs

143,726,002
143,726,002
143,726,002
143,726,002
130,450,100
130,450,100
120,401,063

# Gene Loci

16,415
16,415
16,064
16,008
14,691
13,886
13,822

# Primary Transcripts

34,600
47,782
33,963
38,606
30,873
25,822
24,047
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
34,600
47,782
33,963
38,606
30,873
25,822
24,047

# Promoter Regions

21,311
21,303
21,040
21,372
19,229
17,818
17,483
# promoters associated with transcript
20,852
20,850
20,587
20,928
18,792
17,452
17,061
# promoters based on Comparative Genomics
459
453
453
444
437
366
422

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

5,045
5,046
5,049
5,048
5,478
5,529
5,373

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

5,261,353
5,167,486
5,184,783
5,184,028
5,188,464
not available
11
# peptides affected by SNPs
1,038,784
1,015,811
1,014,115
916,491
851,506
not available
4
# TF sites affected by SNPs
5,432,149
5,481,750
5,499,666
4,222,322
4,205,140
not available
6

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

258
258
258
258
238
238
238
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
73,613
95,826
72,941
95,244
79,048
65,351
not available

Matrix-Library

Version 11.0
(92 insect matrices)
Version 10.0
(92 insect matrices)
Version 9.4
(92 insect matrices)
Version 9.3
(92 insect matrices)
Version 9.1
(91 insect matrices)
Version 9.0
(91 insect matrices)
Version 8.4
(91 insect matrices)

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