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ElDorado Statistics for Bos taurus Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Bos taurus UMD 3.1.1
Bos taurus UMD 3.1.1
NCBI build 6
NCBI build 6
NCBI build 6
NCBI build 6
NCBI build 5

# Contigs

3,144
3,144
3,317
3,317
3,317
3,317
11,894

# Basepairs

2,670,139,648
2,670,139,648
2,670,422,299
2,670,422,299
2,670,422,299
2,670,422,299
2,918,090,798

# Gene Loci

27,214
27,211
31,628
28,186
27,590
23,657
23,420

# Primary Transcripts

93,829
103,056
106,359
88,212
68,805
69,355
73,968
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
30,134
33,782
28,777
25,746
22,678
12,899
14,643
# bronze
63,695
69,274
77,582
62,466
46,127
56,456
59,325

# Promoter Regions

80,095
79,519
86,523
78,823
76,894
70,264
67,906
# promoters associated with transcript
40,968
40,954
48,164
42,932
42,177
53,486
52,780
# promoters based on Comparative Genomics
39,127
38,565
38,359
35,891
34,717
16,778
15,126

# PromoterInspector Predictions

18,682
18,682
18,722
18,722
18,722
18,722
19,207

# Homology groups

17,891
17,864
17,896
17,800
17,997
18,001
17,436

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

85,331,503
81,921,105
82,023,911
62,611,281
19,483,059
8,526,860
8,188,964
# peptides affected by SNPs
10,633,304
10,556,941
9,630,609
7,667,704
230,016
76,494
75,940
# TF sites affected by SNPs
390,196,143
357,349,730
397,171,197
293,879,853
75,426,909
32,825,554
30,548,732

# Module matches in promoters

1,706,611
1,603,174
1,028,160
938,414
916,978
751,973
672,081

# SMARs

269,225
269,225
269,235
269,235
269,235
269,235
278,020

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

876
876
876
876
867
979
653
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
213,213
221,912
202,341
228,886
199,492
149,335
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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